SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30698

Length: 382 nt

UniGene Fasta

>uagpf_v2_unigene30698
CGTCGTGACCTTGGCTGTCACTCAATAATGTCCAAGCGAGATGTTGTCTCATGGAATGCTATGATTTCTGGGTATGCCATGAATGGATGTGGCAAGGAGGCAATCGAAATCTTCGAACAAATGAAAAATTCTTTGTCAAAACCAAACAAGTCCACATTTATTGGTGTTCTCTCTGCATGTTGCCACGCAGGCCTAGTGGATGAGGGTTGGAAATATTTTGATTCTATGAGTAAACTTTACAACATAATACCTGTATCGGAACACTACTGCTGCATGGTTGATCTTCTTGGCCGTGCTGGGTATCTGGATGAAGCGCACGATTTTATAACAGAATGTCTGTAAAACCTGATGCTACAATATGGATGTCTCTGCTTGCTGCCTG

Ace file of the UniGene uagpf_v2_unigene30698

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene64271	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SIT7.1\|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb\|AAD22682.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06244.1\| pentatricopeptide repe	-	-	3.0e-40	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 24 aas, your sequence is shorter than subject: 114 - 232

Fln protein: RRDLGCHSIMSKRDVVSWNAMISGYAMNGCGKEAIEIFEQMKNSLSKPNKSTFIGVLSACCHAGLVDEGWKYFDSMSKLYNIIPVSEHYCCMVDLLGRAGYLDEAHDFITECL*

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAATGTCCAAGCGAGATGTTGTCTCATGGAATGCTATGATTTCTGGGTATGCCATGAATGGATGTGGCAAGGAGGCAATCGAAATCTTCGAACAAATGAAAAATTCTTTGTCAAAACCAAACAAGTCCACATTTATTGGTGTTCTCTCTGCATGTTGCCACGCAGGCCTAGTGGATGAGGGTTGGAAATATTTTGATTCTATGAGTAAACTTTACAACATAATACCTGTATCGGAACACTACTGCTGCATGGTTGATCTTCTTGGCCGTGCTGGGTATCTGGATGAAGCGCACGATTTTATAACAGAATGTCTGTAAAACCTGATGCTACAATATGGATGTCTCTGCTTGCTGCCTG

Fln Alignment:

uagpf_mira_c13196___MSKRDVVSWNAMISGYAMNGCGKEAIEIFEQMKNSLSKPNKSTFIGVLSACCHAGLVDEGWKYFDSMSKLYNIIPVSEHYCCMVDLLGRAGYLDEAHDFITE
D5AB53________________MSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEAHDFINK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain