SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30693

Length: 447 nt

UniGene Fasta

>uagpf_v2_unigene30693
GACTTTGGGCTTGCTCGCCTATATGAGCATGGGTCAAATCCTCACACCACCCATGTAGTTGGAACTCTTGGCTACCTTGCACCAGAGCTTACGCGCACTGGTAAGGCCACAACAAGCACTGATGTGTTTGGGTTTGGGGCATTATTGCTTGAAGTAGCTTGTGGAAGAAAACCTATTGAGCCGAAGAGGTCTCCTGAAGAACTAGTCTTGGTGGATTGGGTGTGGGAGTTGCATTCCAATGGGAAGCTTTTGCATGCAGTGGATCCTAGACTTCTTAATGAATACTCTATTGAAGAGGCTGAGCTCGTTCTTCGACTGGGTTTATTGTGTTCTCACCCTCATCCCGAAGCTCGACCTAGTATGAGACAGGTAGTGCAAATGCTTTCAGGCGATAAACCACTTCCTGTCCTACCTTCTGAACCTCCCTCAGTAGACTCATCTCCAATA

Ace file of the UniGene uagpf_v2_unigene30693

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18187	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	l-type lectin-domain containing receptor kinase -like	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3		IPR001899	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3		IPR015706	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 149 - 636

Fln protein: DFGLARLYEHGSNPHTTHVVGTLGYLAPELTRTGKATTSTDVFGFGALLLEVACGRKPIEPKRSPEELVLVDWVWELHSNGKLLHAVDPRLLNEYSIEEAELVLRLGLLCSHPHPEARPSMRQVVQMLSGDKPLPVLPSEPPSVDSSPI

Protein Length: 150

Fln nts: GACTTTGGGCTTGCTCGCCTATATGAGCATGGGTCAAATCCTCACACCACCCATGTAGTTGGAACTCTTGGCTACCTTGCACCAGAGCTTACGCGCACTGGTAAGGCCACAACAAGCACTGATGTGTTTGGGTTTGGGGCATTATTGCTTGAAGTAGCTTGTGGAAGAAAACCTATTGAGCCGAAGAGGTCTCCTGAAGAACTAGTCTTGGTGGATTGGGTGTGGGAGTTGCATTCCAATGGGAAGCTTTTGCATGCAGTGGATCCTAGACTTCTTAATGAATACTCTATTGAAGAGGCTGAGCTCGTTCTTCGACTGGGTTTATTGTGTTCTCACCCTCATCCCGAAGCTCGACCTAGTATGAGACAGGTAGTGCAAATGCTTTCAGGCGATAAACCACTTCCTGTCCTACCTTCTGAACCTCCCTCAGTAGACTCATCTCCAATA

Fln Alignment:

uagpf_mira_c13187___DFGLARLYEHGSNPHTTHVVGTLGYLAPELTRTGKATTSTDVFGFGALLLEVACGRKPIEPKRSPEELVLVDWVWELHSNGKLLHAVDPRLLNE--YSIEEAELVLRLGLLCSHPHPEARPSMRQVVQMLSGD
A9NVC0________________DFGLARLYDHAENPETTHVVGTLGYIAPELIQTGKATPSSDVFSFGVLLLEVACGRNPVDSLEDSERMILAEWAWELYTEGRLLEASDPKLAGKGGYDVGEMEKVLKLGLLCSHPEPESRLGMRHVCQILDGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain