SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30687

Length: 230 nt

UniGene Fasta

>uagpf_v2_unigene30687
CGTCGTGACCTTGGCTGTCACTCGTTGTTTGGTTCACCAGATCCGAAAAATTTGAGCTTCAAATCTATTTCTCTGGCCGCTGGAAATTTCTGATAATGGCGAAGAGGCACGTAGGCGTTGGCATAGACTTCTCCGCAGGCAGCGAGTACGCCCTCCGTTGGACTATCGCCAACCTTGCCAGAGATGGAGATATGCTGTACTTGATATATGTGAACAGTGACGTTGAATAT

Ace file of the UniGene uagpf_v2_unigene30687

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4216	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	universal stress protein (USP) family protein [Arabidopsis thaliana] gb\|AAK55691.1\|AF378888_1 AT3g17020/K14A17_14 [Arabidopsis thaliana] dbj\|BAA94980.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK91493.1\| AT3g17020/K14A17_14 [Arabidopsis thalian	-	-	5.0e-35	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	universal stress protein family protein	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	0.0	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	WRC	IPR014977	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWU4

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 45 - 163

Fln protein: MAKRHVGVGIDFSAGSEYALRWTIANLARDGDMLYLIYVNSDVEY

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTTGTTTGGTTCACCAGATCCGAAAAATTTGAGCTTCAAATCTATTTCTCTGGCCGCTGGAAATTTCTGATA_-_ATGGCGAAGAGGCACGTAGGCGTTGGCATAGACTTCTCCGCAGGCAGCGAGTACGCCCTCCGTTGGACTATCGCCAACCTTGCCAGAGATGGAGATATGCTGTACTTGATATATGTGAACAGTGACGTTGAATAT

Fln Alignment:

uagpf_mira_c13173___MAKRHVGVGIDFSAGSEYALRWTIANLARDGDMLYLIYVNSDVEY
A9NWU4________________MVERKVGVAMDMSECSRGALKWAVESLLREGDCLVIINVQGSVTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain