SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30632

Length: 234 nt

UniGene Fasta

>uagpf_v2_unigene30632
CGTCGTGACCTTGGCTGTCACTCCAACTCGATGAGATTCGAAACCATGTCCTGGTCCAGCCAAGTGAAACACAAGAAGCCCAAGGTGATTGTAATATCAGGTCCCACGGGCGTCGGTAAAAGCAGACTCGCATTGCAATTGGCCAAGAGAATAGGCGGTGAAATCATCAGTGCTGATTCCGTGCAGGTTTACAGGGGTTTAGATGTTGGATCAGCAAAAACTCTTATTGGAGAT

Ace file of the UniGene uagpf_v2_unigene30632

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6444	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SE49_RICCO	-	-	58%
FL-Next	Isoform 2 of tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9	-	-	72%
Blast2go	trna dimethylallyltransferase 9	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA dimethylallyltransferase.	EC:2.5.1.75	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Zeatin biosynthesis	00908	68%
Blast2go	Biosynthesis of plant hormones	01070	68%
Blast2go	Metabolic pathways	01100	68%
Blast2go	Biosynthesis of secondary metabolites	01110	68%

Source	GOs	Term	Type	Identity
Blast2go	cytokinin biosynthetic process	GO:0009691	Biological Process	68%
Blast2go	tRNA processing	GO:0008033	Biological Process	68%
Blast2go	ATP binding	GO:0005524	Molecular Function	68%
Blast2go	mitochondrion	GO:0005739	Cellular Component	68%
Blast2go	tRNA dimethylallyltransferase activity	GO:0052381	Biological Process	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	tRNA isopentenyltransferase	IPR002627	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	tRNA delta(2)-isopentenylpyrophosphate transferase	IPR018022	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5J6-2

Fln msg: Distance to subject end: 358 aas, your sequence is shorter than subject: 78 - 459

Fln protein: RRDLGCHSNSMRFETMSWSSQVKHKKPKVIVISGPTGVGKSRLALQLAKRIGGEIISADSVQVYRGLDVGSAKTLIGD

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCCAACTCGATGAGATTCGAAACCATGTCCTGGTCCAGCCAAGTGAAACACAAGAAGCCCAAGGTGATTGTAATATCAGGTCCCACGGGCGTCGGTAAAAGCAGACTCGCATTGCAATTGGCCAAGAGAATAGGCGGTGAAATCATCAGTGCTGATTCCGTGCAGGTTTACAGGGGTTTAGATGTTGGATCAGCAAAAACTCTTATTGGAGAT

Fln Alignment:

uagpf_mira_c13065___MSWSSQVKHKKPKVIVISGPTGVGKSRLALQLAKRIGGEIISADSVQVYRGLDVGSAK
Q9C5J6-2______________LNGNKKKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEIISADSVQVYKGLDVGSAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain