SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30613

Length: 420 nt

UniGene Fasta

>uagpf_v2_unigene30613
CGTCGTGACCTTGGCTGTCACTCAATTTCTATGGAGATGGATCTCAGTTGCATCTTGTTGTTGGTTCTGCTCTTCATCTTTGTGTTTACTTTGGTGAGAATTGTGATAAAAGTATGGTGGAAGCCTGGTCGAATGAAGAAGTATTTCGAATCGCAGGGTATCTCGGGTCCTCCATACAGACTGCTGTATGGAAACACAATGGAAGTCATTCAAATGATGAAGGAAACGTACTCGGCTCCCATGAAGTTCTCCCATGATATTTTGTCTCGAGTTCTTCCAGAGCTTCATGCTTGGACCAATACCTACGGCGAGATTTTCGTGTACTGGTTCGGTCCTGTGCCAAGATTGTTATTCCCCAGCCAGAGTTGATCAGGGAGCTGCTGTGCAATAAATCAAAGCAGTACGAGAAACCAGAGCCGA

Ace file of the UniGene uagpf_v2_unigene30613

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30686	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SEM0_RICCO	-	-	2.0e-24	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	cytochrome p450	-	-	2.09486e-32	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	2.09486e-32	65%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine metabolism	00360	2.09486e-32	65%
Blast2go	Methane metabolism	00680	2.09486e-32	65%
Blast2go	Phenylpropanoid biosynthesis	00940	2.09486e-32	65%
Blast2go	Biosynthesis of phenylpropanoids	01061	2.09486e-32	65%
Blast2go	Metabolic pathways	01100	2.09486e-32	65%
Blast2go	Biosynthesis of secondary metabolites	01110	2.09486e-32	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	brassinosteroid homeostasis	GO:0010268	Biological Process	2.09486e-32	65%
Blast2go	brassinosteroid metabolic process	GO:0016131	Biological Process	2.09486e-32	65%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	2.09486e-32	65%
Blast2go	response to light stimulus	GO:0009416	Biological Process	2.09486e-32	65%
Blast2go	protein binding	GO:0005515	Molecular Function	2.09486e-32	65%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	2.09486e-32	65%
Blast2go	steroid hydroxylase activity	GO:0008395	Molecular Function	2.09486e-32	65%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 389 aas, your sequence is shorter than subject: 113 - 517

Fln protein: MEMDLSCILLLVLLFIFVFTLVRIVIKVWWKPGRMKKYFESQGISGPPYRLLYGNTMEVIQMMKETYSAPMKFSHDILSRVLPELHAWTNTYGEIFVYWFGPVPRLLFPSQS*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCT_-_ATGGAGATGGATCTCAGTTGCATCTTGTTGTTGGTTCTGCTCTTCATCTTTGTGTTTACTTTGGTGAGAATTGTGATAAAAGTATGGTGGAAGCCTGGTCGAATGAAGAAGTATTTCGAATCGCAGGGTATCTCGGGTCCTCCATACAGACTGCTGTATGGAAACACAATGGAAGTCATTCAAATGATGAAGGAAACGTACTCGGCTCCCATGAAGTTCTCCCATGATATTTTGTCTCGAGTTCTTCCAGAGCTTCATGCTTGGACCAATACCTACGGCGAGATTTTCGTGTACTGGTTCGGTCCTGTGCCAAGATTGTTATTCCCCAGCCAGAGTTGATCAGGGAGCTGCTGTGCAATAAATCAAAGCAGTACGAGAAACCAGAGCCGA

Fln Alignment:

uagpf_mira_c13026___VWWKPGRMKKYFESQGISGPPYRLLYGNTMEVIQMMKETYSAPMKFSHDILSRVLPELHAWTNTYGEIFVYWFGPVPRLLFP
A9NWW9________________IWWKPLQVKKCFESQGVRGPPYRLLNGNFADMVRMNTQAKSTPIPWSHDIVPRVLPYYHHWTKTYGKDFIYWVGSKPRLNVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain