SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30459

Length: 298 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene30459
CACAACCAAGAATCTCTTATTTCACAACCAAAAATCTCACAGGCCAATTTGATATTTGGCTAGGCAGTGAAAATTATTGCTATTTTTATGAAGAGTTTGTAAGAAGGTAATGGCCGGAACTATCATAAAATTGATCGTCGAAGTGGTTGATGCGCACGATCTGACGCCCAAGGATGGGGTCGGTACATCCAGTCCTTATGTTATGGTTGACTTCGCTGGGCAGAGAAGAAAAACAGGGATTAAACATAGGGAATTGAATCCAGTTTGGAAAGAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene30459 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37078	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00168, C2, C2 domain	-	-	6.0e-17	39%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	66%
Blast2go	at3g03680	-	-	1.01376e-28	71%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Protein of unknown function DUF1118	IPR009500	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B8B7L0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 80 aas, your sequence is shorter than subject: 56 - 145

Fln protein: MAGTIIKLIVEVVDAHDLTPKDGVGTSSPYVMVDFAGQRRKTGIKHRELNPVWKE*

Protein Length: 57

Fln nts: CACAACCAAGAATCTCTTATTTCACAACCAAAAATCTCACAGGCCAATTTGATATTTGGCTAGGCAGTGAAAATTATTGCTATTTTTATGAAGAGTTTGTAAGAAGGTA_-_ATGGCCGGAACTATCATAAAATTGATCGTCGAAGTGGTTGATGCGCACGATCTGACGCCCAAGGATGGGGTCGGTACATCCAGTCCTTATGTTATGGTTGACTTCGCTGGGCAGAGAAGAAAAACAGGGATTAAACATAGGGAATTGAATCCAGTTTGGAAAGAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_c12683___AGTIIKLIVEVVDAHDLTPKDGVGTSSPYVMVDFAGQRRKTGIKHRELNPVWKE
B8B7L0________________AETVRKLVVEVVEARNLLPKDGTGTSSPYARVDFDGQRRKTHTVPRELNPAWNE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain