SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30400

Length: 330 nt

UniGene Fasta

>uagpf_v2_unigene30400
CGTCGTGACCTTGGCTGTCACTCAAAGTCGTGCAGGTCGACGGGTAGGAGCAAAGCAAGTTTCGTCGTGACCTTGGCTGTCACTCAATATTGCTCACATTGGCTATGAATTGAATGTCTTGGGAACTAGGGGTCCAAGACGGATGCAATGCATCATGCATTCTATTCCAGCTTCTGCTGTGCAGCCAGGAGGCAGTGCTCCAACTCCTGTTGAACCTTCGGTCACCAGTCTAGACCAGTCTCTTGCATCTTGTCCTACTTTTGGCTCCAAGTCGTGCATTTTAGAAAGTTCATCTATCTCTGAGCCACTTACCGGTAGCAACTTGAAAGA

Ace file of the UniGene uagpf_v2_unigene30400

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1601	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	tubby-like f-box protein 3	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric diester hydrolases.	EC:3.1.4.-	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ether lipid metabolism	00565		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	76%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	76%
Blast2go	phosphoric diester hydrolase activity	GO:0008081	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUX5

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 109 - 418

Fln protein: VVTLAVTQSRAGRRVGAKQVSS*PWLSLNIAHIGYELNVLGTRGPRRMQCIMHSIPASAVQPGGSAPTPVEPSVTSLDQSLASCPTFGSKSCILESSSISEPLTGSNLK

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTCGTGCAGGTCGACGGGTAGGAGCAAAGCAAGTTTCGTCGTGACCTTGGCTGTCACTCAATATTGCTCACATTGGCTATGAATTGAATGTCTTGGGAACTAGGGGTCCAAGACGGATGCAATGCATCATGCATTCTATTCCAGCTTCTGCTGTGCAGCCAGGAGGCAGTGCTCCAACTCCTGTTGAACCTTCGGTCACCAGTCTAGACCAGTCTCTTGCATCTTGTCCTACTTTTGGCTCCAAGTCGTGCATTTTAGAAAGTTCATCTATCTCTGAGCCACTTACCGGTAGCAACTTGAAAGA

Fln Alignment:

uagpf_mira_c12563___SRAGRRVGAKQVSS*-PWLSLNIAHIGYELNVLGTRGPRRMQCIMHSIPASAVQPGGSAPTPVEPSVTSLDQSLASCPTFGXXXXXXXXXXXXXPLTGSNLK
A9NUX5________________SRAGRRVGAKQVSPRVPAGSYNIAHIGYELNVLGTRGPRRMQCIMHSIPASAVQPGGSAPTPVEPSITSLDHSLASCPTFGSKSCILESPSISEPLTNSNSK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
64			66	33	0.997471
65		33		66	0.997471
67	33		66		0.997471
68	33			66	0.997471
71		66	33		0.997471
72		66		33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain