SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30399

Length: 198 nt

UniGene Fasta

>uagpf_v2_unigene30399
TCCGCACGCTTGTGGATGTAGGCGGAAGCGCTGGATTCTGCCTTCACATGATCATACAAAAGCATGGAAATATCAGAGGAATCAACTTCGATTTGCCCTATGTTGTTGCAGGGGCTCCGGCATATGATGGTATAGAACATGTGGGTGGTGATATGTTTGAATTCATTCCATCTGGAGATGCTATATTCATGAAGTGTA

Ace file of the UniGene uagpf_v2_unigene30399

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9944	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	O-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9S0A7_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	caffeic acid 3-o-methyltransferase	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Caffeate O-methyltransferase.	EC:2.1.1.68	-	0.0	70%

Source	KEGGs	Term	Identity
Blast2go	Phenylpropanoid biosynthesis	00940	70%
Blast2go	Biosynthesis of phenylpropanoids	01061	70%
Blast2go	Metabolic pathways	01100	70%
Blast2go	Biosynthesis of secondary metabolites	01110	70%

Source	GOs	Term	Type	Identity
Blast2go	methylation	GO:0032259	Biological Process	70%
Blast2go	caffeate O-methyltransferase activity	GO:0047763	Molecular Function	70%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	O-methyltransferase, COMT, eukaryota	IPR016461	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQK0

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 65 - 395

Fln protein: RTLVDVGGSAGFCLHMIIQKHGNIRGINFDLPYVVAGAPAYDGIEHVGGDMFEFIPSGDAIFMKC

Protein Length: 66

Fln nts: TCCGCACGCTTGTGGATGTAGGCGGAAGCGCTGGATTCTGCCTTCACATGATCATACAAAAGCATGGAAATATCAGAGGAATCAACTTCGATTTGCCCTATGTTGTTGCAGGGGCTCCGGCATATGATGGTATAGAACATGTGGGTGGTGATATGTTTGAATTCATTCCATCTGGAGATGCTATATTCATGAAGTGTA

Fln Alignment:

uagpf_mira_c12561___TLVDVGGSAGFCLHMIIQKHGNIRGINFDLPYVVAGAPAYDGIEHVGGDMFEFIPSGDAIFMK
B8LQK0________________TLVDVGGGTGAALSMIVKQHPHIRGINLDLPHVIAGAPTLPGVEHVGGNMFEHIPPADAIFMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain