SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30296

Length: 348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene30296
AGAGACAGTTGAGCAGAGTCTATTCTAGAGAGAGTCCATTCAGATGTGTGTGGACCATTCTTGATAGCATCCATGACCAAACACAAGTATTATGTTATACTTGTTGATGACTATTCTTGTAAATGGTGGATATTTTTCATGTAGAAAAAGGATCAAATTTTCACAAAGTTTTGTGAGTTCAAAGCATTCATGGAGAAAGAGTCAGGAAAGAAGGTTAAATCTCTATGGAGAGATAACGGTGGTGAGTATGTCTAAGATGATTTTAAGAAATTTTATGCAGCGAAAGGGATTAAACGAGAGTTGACAACATCTCATAACCCTCAACAGAATGGGGTGGCTGAGAGGAAG

Ace file of the UniGene uagpf_v2_unigene30296 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59816	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=1 Tax=Drosophila melanogaster RepID=B6V6Z8_DROME	-	-	5.0e-26	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	copia-type polyprotein	-	-	6.89209e-31	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 166 aas, your sequence is shorter than subject: 116 - 407

Fln protein: RDS*AESILERVHSDVCGPFLIASMTKHKYYVILVDDYSCKWWIFFM*KKDQIFTKFCEFKAFMEKESGKKVKSLWRDNGGEYV*DDFKKFYAAKGIKRELTTSHNPQQNGVAERK

Protein Length: 117

Fln nts: AGAGACAGTTGAGCAGAGTCTATTCTAGAGAGAGTCCATTCAGATGTGTGTGGACCATTCTTGATAGCATCCATGACCAAACACAAGTATTATGTTATACTTGTTGATGACTATTCTTGTAAATGGTGGATATTTTTCATGTAGAAAAAGGATCAAATTTTCACAAAGTTTTGTGAGTTCAAAGCATTCATGGAGAAAGAGTCAGGAAAGAAGGTTAAATCTCTATGGAGAGATAACGGTGGTGAGTATGTCTAAGATGATTTTAAGAAATTTTATGCAGCGAAAGGGATTAAACGAGAGTTGACAACATCTCATAACCCTCAACAGAATGGGGTGGCTGAGAGGAAG

Fln Alignment:

uagpf_mira_c12350___AESILERVHSDVCGPFLIASMTKHKYYVILVDDYSCKWWIFFM*KKDQIFTKFCEFKAFMEKESGKKVKSLWRDNGGEYV*DDFKKFYAAKGIKRELTTSHNPQQNGVAERK
B8LKX7________________AKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain