SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30280

Length: 205 nt

UniGene Fasta

>uagpf_v2_unigene30280
CGTCGTGACCTTGGCTGTCACTCAATTTGGAACTTCCTCCAGATGTAGCTGCTGCTAATGTAGGAACCAATCAGAAGACATTGTTTGTAGCCCCAACATTAGGTATGCCGGTAAGCCAAATTTGGATGCAAAAGTCTTCTCTTGCAGGTGAGCATGCAGCTGCAGGCAACTTTGAAACAGCTTTACGCCTACTGAGTCGTCAACT

Ace file of the UniGene uagpf_v2_unigene30280

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6461	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Coatomer alpha subunit n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q6RYF4_HORVD	-	-	68%
FL-Next	sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice).	-	-	66%
Blast2go	coatomer alpha	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	82%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	82%
Blast2go	myosin heavy chain kinase activity	GO:0016905	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	transporter activity	GO:0005215	Molecular Function	82%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	82%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	82%
Blast2go	COPI vesicle coat	GO:0030126	Cellular Component	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0J3D9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 274 aas, your sequence is shorter than subject: 67 - 1218

Fln protein: S*PWLSLNLELPPDVAAANVGTNQKTLFVAPTLGMPVSQIWMQKSSLAGEHAAAGNFETALRLLSRQ

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGGAACTTCCTCCAGATGTAGCTGCTGCTAATGTAGGAACCAATCAGAAGACATTGTTTGTAGCCCCAACATTAGGTATGCCGGTAAGCCAAATTTGGATGCAAAAGTCTTCTCTTGCAGGTGAGCATGCAGCTGCAGGCAACTTTGAAACAGCTTTACGCCTACTGAGTCGTCAACT

Fln Alignment:

uagpf_mira_c12318___WLSLNLELPPDVAAA-NVGTNQKTLFVAPTLGMPVSQIWMQKSSLAGEHAAAGNFETALRLLSRQ
Q0J3D9________________WDLEDLELPPEAETPKNAGNALSVVFVAPPPGMPVSQIWTQKSSLAGEHAAAGNFDTAMRLLSRQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
18	33			66	0.997452
21		66		33	0.997453
22			33	66	0.997453
23		66	33		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain