SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30022

Length: 399 nt

UniGene Fasta

>uagpf_v2_unigene30022
CGTCGTGACCTTGGCTGTCACTCATTATTTGCCAGAGGTCACCTGAGACGTCGTGCCTTTGCTGTCTCTGAAGTGGGATCATGGAGGAGGACAGCTTTAACCATAGCTGTTTGCCTGGTTGTATTAACACTTCTTCCGCTATGGGATAATCTTGCAGAGGAGCTTGGTATAGGGCTTGGTACCACTTCTTTGTGAATGTATAGTTATATACCCTTCATTGAAGGCGAGATTATAGATCTCACCGTCTTCTCAATTTTGGCTTTCTTGTACAGTAATTTTGTTTGATATTTCTGGCCTTGTGACAGCGAGAAGAATATAATGGTGTCAATGATTAAGTAATTATGTTGTAGCTCTACATTGAAAAATGTTTAATTAATCATCAGTTGTTGCGATGGAAGT

Ace file of the UniGene uagpf_v2_unigene30022

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6233	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase M50 family protein [Arabidopsis thaliana] gb\|AAK92744.1\| unknown protein [Arabidopsis thaliana] gb\|AAN71977.1\| unknown protein [Arabidopsis thaliana] gb\|AED93947.1\| Peptidase M50 family protein [Arabidopsis thaliana]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	66%
Blast2go	protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	86%
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	86%
Blast2go	proteolysis	GO:0006508	Biological Process	86%
Blast2go	chloroplast organization	GO:0009658	Biological Process	86%
Blast2go	negative gravitropism	GO:0009959	Biological Process	86%
Blast2go	photosystem II assembly	GO:0010207	Biological Process	86%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	86%
Blast2go	photosystem I assembly	GO:0048564	Biological Process	86%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DDT domain	IPR004022	-	-
Sma3	Peptidase M50	IPR008915	-	-
Sma3	DDT domain, subgroup	IPR018500	-	-
Sma3	DDT domain superfamily	IPR018501	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TL44

Fln msg: Separated hits, possible frame ERROR between 59 and 64, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 65 - 546

Fln protein: S*PWLSLIICQRSPETSCxxxVSEVGSWRRTALTIAVCLVVLTLLPLWDNLAEELGIGLGTTSL*

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTTGCCAGAGGTCACCTGAGACGTCGTGCCTxxxxxxTGTCTCTGAAGTGGGATCATGGAGGAGGACAGCTTTAACCATAGCTGTTTGCCTGGTTGTATTAACACTTCTTCCGCTATGGGATAATCTTGCAGAGGAGCTTGGTATAGGGCTTGGTACCACTTCTTTGTGAATGTATAGTTATATACCCTTCATTGAAGGCGAGATTATAGATCTCACCGTCTTCTCAATTTTGGCTTTCTTGTACAGTAATTTTGTTTGATATTTCTGGCCTTGTGACAGCGAGAAGAATATAATGGTGTCAATGATTAAGTAATTATGTTGTAGCTCTACATTGAAAAATGTTTAATTAATCATCAGTTGTTGCGATGGAAGT

Fln Alignment:

uagpf_mira_c11780___PW-LSLIICQRSPETSCLxxVSEVGSWRRTALTIAVCLVVLTLLPLWDNLAEELGIGLGTT
D7TL44________________PWGLYVLICQRSPEKPCLxxVTEVGTWRKTVLTVAIFLVVLTLLPVWDELAEELGIGLVTT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain