SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene30018

Length: 435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene30018
GAAGTTGTGTTGTTGGATCAGCGAGAAACAATAGTCAATTGCATTGAGTTCAGTTGAGGCAGAGTGTATGGCCGTTGGTTTGGCTAGTTGTGAGGCCATATGGCTTCGCAAGATGTTGTTTGGTCTATTTGGTCAGGCATTGAGACCTTCTGTAATTTACTGTGATAATCAAAGTTGCATAAAACTCACGGAGAATCCAATTTTCATGACAGGTCAAAGCATATTGAGATCAAGTATCACTTCATTAGAGACTATGTCTAAAAGGGAGTTGTCAAGCTTGAGTACATTTCCACAAATAAGGAGGTAGCGGACATATTCACCAAAGCCTTACCACGGGGAAAGCATGTCTACTTCAGAGACAAGATGGGATTGGTGAGGAAAACTTTCCTCGGTAAGAGGGAGTGTTAAAATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene30018 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41917	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	40%
Blast2go	retrotransposon unclassified	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR010256	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P10978

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 26 aas, your sequence is shorter than subject: 102 - 1328

Fln protein: KLCCWISEKQ*SIALSSVEAECMAVGLASCEAIWLRKMLFGLFGQALRPSVIYCDNQSCIKLTENPIFMTGQSILRSSITSLETMSKRELSSLSTFPQIRR*

Protein Length: 103

Fln nts: GAAGTTGTGTTGTTGGATCAGCGAGAAACAATAGTCAATTGCATTGAGTTCAGTTGAGGCAGAGTGTATGGCCGTTGGTTTGGCTAGTTGTGAGGCCATATGGCTTCGCAAGATGTTGTTTGGTCTATTTGGTCAGGCATTGAGACCTTCTGTAATTTACTGTGATAATCAAAGTTGCATAAAACTCACGGAGAATCCAATTTTCATGACAGGTCAAAGCATATTGAGATCAAGTATCACTTCATTAGAGACTATGTCTAAAAGGGAGTTGTCAAGCTTGAGTACATTTCCACAAATAAGGAGGTAG___CGGACATATTCACCAAAGCCTTACCACGGGGAAAGCATGTCTACTTCAGAGACAAGATGGGATTGGTGAGGAAAACTTTCCTCGGTAAGAGGGAGTGTTAAAATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_c11772___WISEKQ*SIALSSVEAECMAVGLASCEAIWLRKMLFGLFGQALRPSVIYCDNQSCIKLTENPIF
P10978________________WQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQEL-GLHQKEYVVYCDSQSAIDLSKNSMY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain