SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29928

Length: 466 nt

UniGene Fasta

>uagpf_v2_unigene29928
CGTCGTGACCTTGGCTGTCGTGACTTTTGCTTTTGCTCTTCCACGACCTACTGCAATGTTTCCCGGCTCTTCCACGAGGACTTCCTGTTCTCTTCCACAACCTGGTGCAATAATGTTTCAGGGCTCTTCCACGACCTGCTGCCATAATGCTTCCGGGCATACGTTCAGAATGCTGAGCTTGCAAAACGATCAATTATTGCAACTGGAGACAACTTGTTGATATCTTCTTTACGAGCTCCATTTAATATGGGACGAAATGGGCGAGCAGGACCAGGAAAGAGATAAAATGTTGCTCCAACTTGAACAAGAATGCTTGGAAGTTTACATACGGAAAGTAGATCAATCAAATTGATCACGGGCTCAGCTTCACCAGGCTATTGCCGATTCCAAAGCAGAGCTCGCATCCATTTATTCTGCCTTCGGAGTTTGCCCTACCATGCTTAAACAGGGAGACAGAATAGCAAGG

Ace file of the UniGene uagpf_v2_unigene29928

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34453	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9RHR0_RICCO	-	-	2.0e-20	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	protein regulator of	-	-	3.32979e-23	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	3.32979e-23	80%
Blast2go	nuclear division	GO:0000280	Biological Process	3.32979e-23	80%
Blast2go	microtubule polymerization	GO:0046785	Biological Process	3.32979e-23	80%
Blast2go	formation by symbiont of syncytium involving giant cell for nutrient acquisition from host	GO:0052096	Biological Process	3.32979e-23	80%
Blast2go	response to nematode	GO:0009624	Biological Process	3.32979e-23	80%
Blast2go	microtubule binding	GO:0008017	Molecular Function	3.32979e-23	80%
Blast2go	cortical microtubule	GO:0055028	Cellular Component	3.32979e-23	80%
Blast2go	preprophase band	GO:0009574	Cellular Component	3.32979e-23	80%
Blast2go	phragmoplast	GO:0009524	Cellular Component	3.32979e-23	80%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg: Distance to subject end: 497 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 70 - 596

Fln protein: MGEQDQERDKMLLQLEQECLEVYIRKVDQSN*SRAQLHQAIADSKAELASIYSAFGVCPTMLKQGDRIAR

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCGTGACTTTTGCTTTTGCTCTTCCACGACCTACTGCAATGTTTCCCGGCTCTTCCACGAGGACTTCCTGTTCTCTTCCACAACCTGGTGCAATAATGTTTCAGGGCTCTTCCACGACCTGCTGCCATAATGCTTCCGGGCATACGTTCAGAATGCTGAGCTTGCAAAACGATCAATTATTGCAACTGGAGACAACTTGTTGATATCTTCTTTACGAGCTCCATTTAATATGGGACGAA_-_ATGGGCGAGCAGGACCAGGAAAGAGATAAAATGTTGCTCCAACTTGAACAAGAATGCTTGGAAGTTTACATACGGAAAGTAGATCAATCAAATTGATCACGGGCTCAGCTTCACCAGGCTATTGCCGATTCCAAAGCAGAGCTCGCATCCATTTATTCTGCCTTCGGAGTTTGCCCTACCATGCTTAAACAGGGAGACAGAATAGCAAGG

Fln Alignment:

uagpf_mira_c11615___IWDEMGEQDQERDKMLLQLEQECLEVYIRKVDQSN*SRAQLHQAIADSKAELASIYSAFG
D5AC28________________IWDEVGASDGEREKMLLQLEQECLEVYRRKVDQANLSRARLHQLLADSEAELEHLISALG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain