SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29895

Length: 421 nt

UniGene Fasta

>uagpf_v2_unigene29895
CGTCGTGACCTTGGCTGTCGTGATCTTTGCTGTCACTCATATCGCCTTGCGGCTGTGCATCATGGTTGTCGTTTATTTCTTAAGAGTAGGCGTTGAGGGGTGCAGCATTACTCCTCCCACCGTCGTCTGCTCAGGAGGAGCAGGATGCGACATCTTCAACAACCAAGGCTTATGGGAAGATCGGGCCCCTTGCAGGGCGGCCACCGCTGTATTTCCCACCACGGAGGCAGGCCTAGTGGCCGCCGTCGCCGGTGCTGTAAGGAACAAACAGAAGATTAACGTGGTCAGCGGCCGCGCTCACAGCCACCACAGACTAGTGTGCGTGGGGGATGGTGGGCTCATCATCAGCACCAGAGACTACGCAGCCACTCCAGTTGTTAACGAAGCTGCCCAGACGATCACGGTGCAGGCGGGGGTTCGC

Ace file of the UniGene uagpf_v2_unigene29895

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41878	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAD binding domain, putative [Oryza sativa Japonica Group]	-	-	2.0e-10	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	fad binding	-	-	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR72

Fln msg: Distance to subject end: 462 aas, your sequence is shorter than subject: 120 - 601

Fln protein: MVVVYFLRVGVEGCSITPPTVVCSGGAGCDIFNNQGLWEDRAPCRAATAVFPTTEAGLVAAVAGAVRNKQKINVVSGRAHSHHRLVCVGDGGLIISTRDYAATPVVNEAAQTITVQAGVR

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCGTGATCTTTGCTGTCACTCATATCGCCTTGCGGCTGTGCATC_-_ATGGTTGTCGTTTATTTCTTAAGAGTAGGCGTTGAGGGGTGCAGCATTACTCCTCCCACCGTCGTCTGCTCAGGAGGAGCAGGATGCGACATCTTCAACAACCAAGGCTTATGGGAAGATCGGGCCCCTTGCAGGGCGGCCACCGCTGTATTTCCCACCACGGAGGCAGGCCTAGTGGCCGCCGTCGCCGGTGCTGTAAGGAACAAACAGAAGATTAACGTGGTCAGCGGCCGCGCTCACAGCCACCACAGACTAGTGTGCGTGGGGGATGGTGGGCTCATCATCAGCACCAGAGACTACGCAGCCACTCCAGTTGTTAACGAAGCTGCCCAGACGATCACGGTGCAGGCGGGGGTTCGC

Fln Alignment:

uagpf_mira_c11554___THIALRLCIMVVVYFLRVGVEGCSITPPTVVCSGGA-GCDIFNNQGLWEDRAPCRAATAVFPTTEXXXXXXXXXXXRNKQKINVVSGRAHSHHRLVCVGDGGLIISTRDYAATPVVNEAAQTITVQAGV
B8LR72________________TRIALWVCVVVLVYLRRLGVECCSISPPTVVCSGGGRGCDIFNNQGLWEDRTPCRAAASVFPTTEAELVAAVAQAVKKKKKVNVVSGLAHSHTRLVCVGEGGFIISTRDYASTPLVNPTAKTITVEAGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain