SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29879

Length: 322 nt

UniGene Fasta

>uagpf_v2_unigene29879
TGCTTTGTGAGGGGAGGGAGAGAAATCATGAAGCGTTACTTCCAGCCAGTGGAGAAGGACGGTTCCTTCAAAAAGCAGAAGGATCAGCTTACAGGCAACACCTCTCACTCTTCTCTTCCAACAAGCAACGGGACAGGACTGCCACCACAGGCAGAAGAAGCAGATGGCAGCGTGAAGAAGGAGCCCCTCAAGTTCATGTCATGGAACGCAAACAGTCTTTTACTGCGACTCAAGAAGAATCGAACCGAGATCGCCGATTTCGTTCAGCGCCTTGACCCTGACGTCATTGCGATTCAGGAAGTGCGGATACCTGCTGCTGGAG

Ace file of the UniGene uagpf_v2_unigene29879

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	endonuclease/exonuclease/phosphatase domain-containing protein [Arabidopsis thaliana] gb\|AAU94372.1\| At3g48425 [Arabidopsis thaliana] gb\|AAV59281.1\| At3g48425 [Arabidopsis thaliana] gb\|AEE78415.1\| endonuclease/exonuclease/phosphatase domain-containing pro	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	dna-(apurinic or apyrimidinic site) lyase	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	76%
Blast2go	nuclease activity	GO:0004518	Molecular Function	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	0.0	-
Sma3	Exodeoxyribonuclease III xth	IPR004808	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP09

Fln msg: Distance to subject end: 206 aas, your sequence is shorter than subject: 98 - 303

Fln protein: MKRYFQPVEKDGSFKKQKDQLTGNTSHSSLPTSNGTGLPPQAEEADGSVKKEPLKFMSWNANSLLLRLKKNRTEIADFVQRLDPDVIAIQEVRIPAAG

Protein Length: 99

Fln nts: TGCTTTGTGAGGGGAGGGAGAGAAATC_-_ATGAAGCGTTACTTCCAGCCAGTGGAGAAGGACGGTTCCTTCAAAAAGCAGAAGGATCAGCTTACAGGCAACACCTCTCACTCTTCTCTTCCAACAAGCAACGGGACAGGACTGCCACCACAGGCAGAAGAAGCAGATGGCAGCGTGAAGAAGGAGCCCCTCAAGTTCATGTCATGGAACGCAAACAGTCTTTTACTGCGACTCAAGAAGAATCGAACCGAGATCGCCGATTTCGTTCAGCGCCTTGACCCTGACGTCATTGCGATTCAGGAAGTGCGGATACCTGCTGCTGGAG

Fln Alignment:

uagpf_mira_c11520___MKRYFQPVEKDGSFKKQKDQLTGNTSHSSLPTSNGTGLPPQAEEADGSVKKEPLKFMSWNANSLLLRLKKNRTEIADFVQRLDPDVIAIQEVRIPAAG
B8LP09________________MKRYFQPVEKDGSFKKHKEQLTANPSHSSPPTSNGTTVPPQAEEADG-VKKEPLKFMSWNANSLLLRLKKNRTELADFVQRLDPDVIAIQEVRIPAAG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain