SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29870

Length: 197 nt

UniGene Fasta

>uagpf_v2_unigene29870
CGTCGTGACCTTGGCTGTCACTCACTTCTAGGCCAAGCTGTAGTTGATCCCTACGCTCAGGCTTTGCAAGGCTTACTGAACTTATTGAGCGAAGAGGTGAAGCATATGCCAATTCAGATGTAAAAGTATCACTGCAAAAGATTGCAGCAGAACTTGGCGTTGAAGATGTTTCTGCTCTTACCCCCACAACTATTGCC

Ace file of the UniGene uagpf_v2_unigene29870

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3003	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Shikimate kinase n=3 Tax=Zea mays RepID=B6UDH4_MAIZE	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	shikimate kinase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Shikimate kinase.	EC:2.7.1.71	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	75%
Blast2go	Biosynthesis of phenylpropanoids	01061	75%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	75%
Blast2go	Biosynthesis of plant hormones	01070	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	75%
Blast2go	aromatic amino acid family biosynthetic process	GO:0009073	Biological Process	75%
Blast2go	shikimate kinase activity	GO:0004765	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Shikimate kinase	IPR000623	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUN9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 22 aas, your sequence is shorter than subject: 65 - 318

Fln protein: S*PWLSLTSRPSCS*SLRSGFARLTELIERRGEAYANSDVKVSLQKIAAELGVEDVSALTPTTIA

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTCTAGGCCAAGCTGTAGTTGATCCCTACGCTCAGGCTTTGCAAGGCTTACTGAACTTATTGAGCGAAGAGGTGAAGCATATGCCAATTCAGATGTAAAAGTATCACTGCAAAAGATTGCAGCAGAACTTGGCGTTGAAGATGTTTCTGCTCTTACCCCCACAACTATTGCC

Fln Alignment:

uagpf_mira_c11503___RLTELIERRGEAYANSDVKVSLQKIAAELGVEDVSALTPTTIA
A9NUN9________________RLTKLYEDRAEAYKSSDVKVSLRDIAVELGNKDVARLSPTVIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain