SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29728

Length: 194 nt

UniGene Fasta

>uagpf_v2_unigene29728
CGTCGTGACCTTGGCTGTCACTTTTTTTTGGGTATCATACTACAAGGTGGTTACTTTCATGGACTTGATGATTTGAGTTATGGAGTTGACTTACTACATATACGATGGCTTGGTATACTACAGAGAATTGCGATTGGATATTTCCTGGCAGCAATGTGTGAAATTTGGTTAACATCCAACAGTCTGGTAGATTC

Ace file of the UniGene uagpf_v2_unigene29728

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3552	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	75%
Blast2go	heparan-alpha-glucosaminide n-acetyltransferase-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B6U933

Fln msg: Distance to subject end: 299 aas, your sequence is shorter than subject: 64 - 492

Fln protein: RRDLGCHFFLGIILQGGYFHGLDDLSYGVDLLHIRWLGILQRIAIGYFLAAMCEIWLTSNSLVD

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTTTTTTTTGGGTATCATACTACAAGGTGGTTACTTTCATGGACTTGATGATTTGAGTTATGGAGTTGACTTACTACATATACGATGGCTTGGTATACTACAGAGAATTGCGATTGGATATTTCCTGGCAGCAATGTGTGAAATTTGGTTAACATCCAACAGTCTGGTAGATTC

Fln Alignment:

uagpf_mira_c11200___FFLGIILQGGYFHGLDDLSYGVDLLHIRWLGILQRIAIGYFLAAMCEIWLTSNSLVD
B6U933________________FILGVILQGGYIHGRHKLTYGVDLDHIRWLGVLQRIAIGYFVAAMSEIWLVNNNLVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain