SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29644

Length: 212 nt

UniGene Fasta

>uagpf_v2_unigene29644
CGTCGTGGCTTTTAAGGACACACATGTTACGACGGCTGTTCGTGGAACCATTGGCCACATAGCACCTGAGTACCTTTCTACTGGAAAGTCTTCGGAAAAGACAGACGTATTTGGTTATGGAATCATGTTGCTGGAACTTATTACAGGACAACGGGCATTTGACCTTGCACGTTTAGCAAATGATGATGATGTCATGTTGCTTGACTGGGTTA

Ace file of the UniGene uagpf_v2_unigene29644

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6539	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Somatic embryogenesis receptor-like kinase 1 n=2 Tax=Coniferales RepID=D1MEH6_9CONI	-	-	86%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia.	-	-	98%
Blast2go	somatic embryogenesis receptor kinase 1-like	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	92%
Blast2go	receptor activity	GO:0004872	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	92%
Blast2go	integral to membrane	GO:0016021	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D1MEH6

Fln msg: Distance to subject end: 104 aas, your sequence is shorter than subject: 70 - 630

Fln protein: VVAFKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWV

Protein Length: 71

Fln nts: CGTCGTGGCTTTTAAGGACACACATGTTACGACGGCTGTTCGTGGAACCATTGGCCACATAGCACCTGAGTACCTTTCTACTGGAAAGTCTTCGGAAAAGACAGACGTATTTGGTTATGGAATCATGTTGCTGGAACTTATTACAGGACAACGGGCATTTGACCTTGCACGTTTAGCAAATGATGATGATGTCATGTTGCTTGACTGGGTTA

Fln Alignment:

uagpf_mira_c11003___FKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWV
D1MEH6________________YKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
8	50		50		1.0
9	50	50			1.0
10		50		50	1.0
12	40	20		40	1.0
13			40	60	1.0
14	60		40		1.0
15	60	40			1.0
16			60	40	1.0
18	60			40	1.0
22	60			40	1.0
30		80		20	0.995496
34	25		75		0.996473
45			75	25	0.996473
63	25	75			0.996473
69	75	25			0.996473
94			75	25	0.996473
151	75		25		0.996473
154	25		75		0.996473
164	25	75			0.996473
166		20		80	0.995505
167	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
180	191	ATG ATG ATG ATG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain