SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29596

Length: 228 nt

UniGene Fasta

>uagpf_v2_unigene29596
CGTCGTGACCTTGGCTGTCACTCAGTTCTGGATACTGCAGCTGGAGTTTGGTGCGACAGGAAGTCAGTGATTACTAGTCCTCGGACAGGAAGATACAGTGTAGATGCTGCTGGTGGGGAAGCATCGCTCGAACTCACAAGGCGCTGTCGTCATGCTGCTGCAGCTATGGGTGATCAAGTTTTCATATATGGTGGCTTGCGAGAAGGTGTTTTGCTGGATGACCTGCTT

Ace file of the UniGene uagpf_v2_unigene29596

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59741	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Magnoliophyta RepID=D7T1Q5_VITVI	-	-	58%
FL-Next	Isoform 2 of Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3	-	-	85%
Blast2go	serine threonine-protein phosphatase bsl2-like	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Serine/threonine protein phosphatase, BSU1	IPR012391	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SHS7-2

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 76 - 707

Fln protein: RRDLGCHSVLDTAAGVWCDRKSVITSPRTGRYSVDAAGGEASLELTRRCRHAAAAMGDQVFIYGGLREGVLLDDLL

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCTGGATACTGCAGCTGGAGTTTGGTGCGACAGGAAGTCAGTGATTACTAGTCCTCGGACAGGAAGATACAGTGTAGATGCTGCTGGTGGGGAAGCATCGCTCGAACTCACAAGGCGCTGTCGTCATGCTGCTGCAGCTATGGGTGATCAAGTTTTCATATATGGTGGCTTGCGAGAAGGTGTTTTGCTGGATGACCTGCTT

Fln Alignment:

uagpf_mira_c10911___SVLDTAAGVWCDRKSVITSPRTGRYSVDAAGGEASLELTRRCRHAAAAMGDQVFIYGGLREGVLLDDLL
Q9SHS7-2______________AVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain