SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29551

Length: 361 nt

UniGene Fasta

>uagpf_v2_unigene29551
CGTCGTGACCTTGGCTGTCACTCAGTGTTTTCCACGGGAGACAGGTCTGACCTTGGCTGTGAGTGATCTATGCAGTGTTGGAAACCCTGGGAACCGAGATGAAGGAATTGGGATATGTGGCTGATACAAATTTTGAACTTCATGATGTTGAACAACAGCACAAAGAGCATGCTCTCTGCCACCACAGTGAGAAGTTGGCCATTGCATTTGGGTTGATAACTACCCCTCCTGGGTCACCCATCCGGATCATCAAAAACCTTCGCATGTGCGGTGACTGCCACAGCGCTACCAAATTCATTTCCAAGATTTCTGGGCGAGAAGTAGTTGTGAGGGATTCTAACCGTTTTCATTCTTCGAGGGT

Ace file of the UniGene uagpf_v2_unigene29551

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene52695	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GQ02818.B7_C13 GQ028 - Cambium / phloem scrappings (Normalized library ) Picea glauca cDNA clone GQ02818_C13 5', mRNA sequence.	-	-	2.0e-34	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	pentatricopeptide repeat protein	-	-	2.21549e-39	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Thiamine biosynthesis protein ThiC	IPR002817	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 119 - 246

Fln protein: S*PWLSLSVFHGRQV*PWL*VIYAVLETLGTEMKELGYVADTNFELHDVEQQHKEHALCHHSEKLAIAFGLITTPPGSPIRIIKNLRMCGDCHSATKFISKISGREVVVRDSNRFHSSR

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTTTCCACGGGAGACAGGTCTGACCTTGGCTGTGAGTGATCTATGCAGTGTTGGAAACCCTGGGAACCGAGATGAAGGAATTGGGATATGTGGCTGATACAAATTTTGAACTTCATGATGTTGAACAACAGCACAAAGAGCATGCTCTCTGCCACCACAGTGAGAAGTTGGCCATTGCATTTGGGTTGATAACTACCCCTCCTGGGTCACCCATCCGGATCATCAAAAACCTTCGCATGTGCGGTGACTGCCACAGCGCTACCAAATTCATTTCCAAGATTTCTGGGCGAGAAGTAGTTGTGAGGGATTCTAACCGTTTTCATTCTTCGAGGGT

Fln Alignment:

uagpf_mira_c10810___IYAVLETLGTEMKELGYVADTNFELHDVEQQHKEHALCHHSEKLAIAFGLITTPPGSPIRIIKNLRMCGDCHSATKFISKISGREVVVRDSNRFH
D5AAE0________________IYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFH

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
118		33		66	0.997464
121		33	66		0.997464
128	66	33			0.997464
133			33	66	0.997476
134		33		66	0.997476
136			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain