SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29454

Length: 228 nt

UniGene Fasta

>uagpf_v2_unigene29454
TGTATCGACCTTGGCTGTCACTCAAATCTGTGTTTTCTCAATGCAACACTACAAGCACTCCTATCATGTCCCCCCTTCTTCCAACTTTTACAGACCCTAAAATCTCGTGAAATTCCTGAGGTTGGCTATCCAACACTTCATGCATTTGTTGAGTTTGTGGTCAAGTTTGAGGAAGATGAACCTATTGACCGAGATCTGAAAAAGATGTAAAGGCAACTGGAGGGATTG

Ace file of the UniGene uagpf_v2_unigene29454

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3188	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQ20_VITVI	-	-	63%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 24; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	ubiquitin carboxyl-terminal hydrolase 24	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	75%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	75%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	0.0	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FPS3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 280 aas, your sequence is shorter than subject: 70 - 551

Fln protein: CIDLGCHSNLCFLNATLQALLSCPPFFQLLQTLKSREIPEVGYPTLHAFVEFVVKFEEDEPIDRDLKKM*

Protein Length: 71

Fln nts: TGTATCGACCTTGGCTGTCACTCAAATCTGTGTTTTCTCAATGCAACACTACAAGCACTCCTATCATGTCCCCCCTTCTTCCAACTTTTACAGACCCTAAAATCTCGTGAAATTCCTGAGGTTGGCTATCCAACACTTCATGCATTTGTTGAGTTTGTGGTCAAGTTTGAGGAAGATGAACCTATTGACCGAGATCTGAAAAAGATGTAAAGGCAACTGGAGGGATTG

Fln Alignment:

uagpf_mira_c10630___NLCFLNATLQALLSCPPFFQLLQTLKSREIPEVGYPTLHA
Q9FPS3________________NLCFLNATLQALLSCSPFVQLLQKIQLQDIPKADSPTLAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain