SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29440

Length: 238 nt

UniGene Fasta

>uagpf_v2_unigene29440
CGTCGTGACCTTGGCTGTCACTCAAGTGGTCTATATCGACATTTACGATGCCTTCATAGATATAGTCAGAAATCCAGCCAAATATGGGTTTGAGACATCCAACAGGGGTTGCTGTGGGACAGGATACATAGAGGTGGGAATCACATGCAATTCCAACATTTCATTTATTTGTCCAGACGCCTCCAAATATGTCTTCTGGGATGCCGTCCACTCTACAGAGAAAACGTATCACCTCACA

Ace file of the UniGene uagpf_v2_unigene29440

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6457	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SSI9_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	gdsl esterase lipase	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3		IPR017909	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P062

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 79 - 363

Fln protein: VVTLAVTQVVYIDIYDAFIDIVRNPAKYGFETSNRGCCGTGYIEVGITCNSNISFICPDASKYVFWDAVHSTEKTYHLT

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGGTCTATATCGACATTTACGATGCCTTCATAGATATAGTCAGAAATCCAGCCAAATATGGGTTTGAGACATCCAACAGGGGTTGCTGTGGGACAGGATACATAGAGGTGGGAATCACATGCAATTCCAACATTTCATTTATTTGTCCAGACGCCTCCAAATATGTCTTCTGGGATGCCGTCCACTCTACAGAGAAAACGTATCACCTCACA

Fln Alignment:

uagpf_mira_c10595___QVVYIDIYDAFIDIVRNPAKYGFETSNRGCCGTGYIEVGITCNSNISFICPDASKYVFWDAVHSTEKTYHL
A9P062________________KLAYSDIFSPLIDMVQNPAKYGFENTRKACCGTGLIEVAFTCTKRNPFTCSDASKYIFWDAVHLTEKAYEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain