SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29438

Length: 355 nt

UniGene Fasta

>uagpf_v2_unigene29438
CGTCGTGACCTTGGCTGTCACTCAATTTGTGGTCCTCAATTGACAATGGGCCCAAGCATGCTCCCCACCCTCGTCGTGTCTTTGGCTGTTCTTTTGGTTGAACGATTATCCACTAGATTTGGAAATATAAAGCATGGCGATCTTGTTATTGCTTGCTCTACTGAAAATCCGAAGAAGACCATTTGCAAGCGGGTTATGGGTTTAGAAGGTGACAGAGTTGATTTTTCTATGGCTAATCAAGGACAGAGTCAGTCAGTTGTGGTACCAAAAGGGCATGTTTGGCTTCAAGGCGATAATCTCTCTATTTCTAGAGATTCCAGGCATTTTGGCCCTGTGCCATATGGACTTTTGCAAG

Ace file of the UniGene uagpf_v2_unigene29438

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1019	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptidase-S24/S26 domain-containing protein [Arabidopsis thaliana] gb\|AAS47614.1\| At1g53530 [Arabidopsis thaliana] gb\|AAS76728.1\| At1g53530 [Arabidopsis thaliana] dbj\|BAF01030.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE32952.1\| peptidase-S24/S26	-	-	7.00649e-44	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	mitochondrial inner membrane protease subunit 1	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	69%
Blast2go	peptidase activity	GO:0008233	Molecular Function	69%
Blast2go	membrane	GO:0016020	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S26A, signal peptidase I	IPR000223	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Peptidase S26A, signal peptidase I, lysine active site	IPR019757	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2L1

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 118 - 170

Fln protein: RRDLGCHSICGPQLTMGPSMLPTLVVSLAVLLVERLSTRFGNIKHGDLVIACSTENPKKTICKRVMGLEGDRVDFSMANQGQSQSVVVPKGHVWLQGDNLSISRDSRHFGPVPYGLLQ

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGTGGTCCTCAATTGACAATGGGCCCAAGCATGCTCCCCACCCTCGTCGTGTCTTTGGCTGTTCTTTTGGTTGAACGATTATCCACTAGATTTGGAAATATAAAGCATGGCGATCTTGTTATTGCTTGCTCTACTGAAAATCCGAAGAAGACCATTTGCAAGCGGGTTATGGGTTTAGAAGGTGACAGAGTTGATTTTTCTATGGCTAATCAAGGACAGAGTCAGTCAGTTGTGGTACCAAAAGGGCATGTTTGGCTTCAAGGCGATAATCTCTCTATTTCTAGAGATTCCAGGCATTTTGGCCCTGTGCCATATGGACTTTTGCAAG

Fln Alignment:

uagpf_mira_c10588___LLVERLSTRFGNIKHGDLVIACSTENPKKTICKRVMGLEGDRVDFSMANQGQSQSVVVPKGHVWLQGDNLSISRDSRHFGPVPYGLLQ
A9P2L1________________VLLEKFCLQNYKFSHGDVIVFRSPYEHNEWHVKRLIALPGDWISVP----GTYDILKIPEGHCWVEGDNAVSSLDSRSFGPVPLGLVQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
143		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain