SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29398

Length: 329 nt

UniGene Fasta

>uagpf_v2_unigene29398
CTGGTTACAAAATACAAGTGGAAGGCCGTGAAAGGCGGAGAGATTCGAAGAACGCCAGGTCTATCCTTTCCCAATGGATATCACATTCATCTCCAGTCAAAACAACGAACTGCGACTGGAAATGGCGAATTATGAAAAGGAACCATCTGGTTATTTTGTATACAGCAAAATTACGACTCCATTTCTTTCGTAGATTGAAAGCAAAATTCTGTGCTCTGCCAATTTGATGTTGGATTTGGCTTTGGATTTGAAAACCAAATACCAGTTGGCAGCCAAATTATAAAAGAAAGGAAGGTGATATATGGAATGGACAGGTGTCCAGTGTCGAA

Ace file of the UniGene uagpf_v2_unigene29398

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12486	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome P450, family 87, subfamily A, polypeptide 2 [Arabidopsis thaliana] gb\|AAR24666.1\| At1g12740 [Arabidopsis thaliana] dbj\|BAD44087.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE28919.1\| cytochrome P450, family 87, subfamily A, polypeptide 2	-	-	67%
FL-Next	sp=Cytochrome P450 87A3; Oryza sativa subsp. japonica (Rice).	-	-	70%
Blast2go	cytochrome p450	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	79%
Blast2go	heme binding	GO:0020037	Molecular Function	79%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	79%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	79%
Blast2go	oxygen binding	GO:0019825	Molecular Function	79%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Nucleoside diphosphate kinase	IPR001564	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	F-box associated domain, type 3	IPR013187	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Protein of unknown function DUF2052, coiled-coil	IPR018613	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q7XU38

Fln msg: your sequence is shorter than subject: 45 - 514

Fln protein: LVTKYKWKAVKGGEIRRTPGLSFPNGYHIHLQSKQRTATGNGEL*

Protein Length: 46

Fln nts: CTGGTTACAAAATACAAGTGGAAGGCCGTGAAAGGCGGAGAGATTCGAAGAACGCCAGGTCTATCCTTTCCCAATGGATATCACATTCATCTCCAGTCAAAACAACGAACTGCGACTGGAAATGGCGAATTATGA___AAAGGAACCATCTGGTTATTTTGTATACAGCAAAATTACGACTCCATTTCTTTCGTAGATTGAAAGCAAAATTCTGTGCTCTGCCAATTTGATGTTGGATTTGGCTTTGGATTTGAAAACCAAATACCAGTTGGCAGCCAAATTATAAAAGAAAGGAAGGTGATATATGGAATGGACAGGTGTCCAGTGTCGAA

Fln Alignment:

uagpf_mira_c10517___LVTKYKWKAVKGGEIRRTPGLSFPNGYHIHLQSK
Q7XU38________________LVTKYSWRTVKGGNIVRTPGLSFPDGFHIQLFPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain