SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29384

Length: 257 nt

UniGene Fasta

>uagpf_v2_unigene29384
CGTCGTGACCTTGGCTGTCACTCAATTTCAGCCGCATGCCCAACCTTCGTTGCCTTGTCTGTCACCTCCACAGCACTATATCAGATGAATCCAGGCAGTGCAGTTGGCCCTGTTTCACATGCAGGCCCAGATATAAGTGGTCAAGGGTTAGGGCATGGCAACCTGTCAAATGTGGGCCATGGAATCCAACCTGGTCGGGGCCTAATATGGGTCAAGGCTTGAGTAGCAGTGGGCTACTGTATCATGGCAACCCGTTC

Ace file of the UniGene uagpf_v2_unigene29384

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19691	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hydroxyproline-rich glycoprotein-like protein n=3 Tax=Arabidopsis RepID=Q8VYM7_ARATH	-	-	2.0e-16	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	hydroxyproline-rich glyco protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	0.0	80%
Blast2go	RNA processing	GO:0006396	Biological Process	0.0	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXV2

Fln msg: Separated hits, possible frame ERROR between 73 and 76, and overlapping frame ERROR between 201 and 198, Distance to subject end: 130 aas, your sequence is shorter than subject: 86 - 516

Fln protein: VVTLAVTQFQPHAQPSLPCLSPPxxLYQMNPGSAVGPVSHAGPDISGQGLGHGNLSNVGHGIQPxxxxNMGQGLSSSGLLYHGNPF

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCAGCCGCATGCCCAACCTTCGTTGCCTTGTCTGTCACCTCCACAxxxACTATATCAGATGAATCCAGGCAGTGCAGTTGGCCCTGTTTCACATGCAGGCCCAGATATAAGTGGTCAAGGGTTAGGGCATGGCAACCTGTCAAATGTGGGCCATGGAATCCAACCTGGxxxxxxxxxTAATATGGGTCAAGGCTTGAGTAGCAGTGGGCTACTGTATCATGGCAACCCGTTC

Fln Alignment:

uagpf_mira_c10496___FQPHAQPSLPCLSPPQxLYQMNPGSAVGPVSHAGPDISGQGLGHGNLSNVGHGIQPGRxPNMGQGLSSSG
A9NXV2________________FQPHAQPPLPSQPPPQxLYQMNSGGAVGSVSHAGPDISGQGLGHGNLSNVGHGVQPGRxPNMGQGLSSMG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain