SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29317

Length: 246 nt

UniGene Fasta

>uagpf_v2_unigene29317
CGTCGTGACCTTGGCTGTCACTCATTTTAGAGTGGAGCACTGTAGGAACATTCTCACTGTATGCTCTCTTTACTGCCATTACGTTCATCTTTGTGGTGCTGTGTGTGCCTGAAACCAAGGGGAAAACTCTGGAGGAAATTGAGGCATCATATAGATAAGGTTGAGCTAGCCGGGAACCTTAGATTCTATTGATGGCAGGACATATTGCTCTGAAAGGATAAAGTCCTTTTAACAGAAAAAATTGGT

Ace file of the UniGene uagpf_v2_unigene29317

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25040	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative ERD6-like transporter (Fragment) n=2 Tax=Vitis vinifera RepID=D7SPD1_VITVI	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	sugar transporter erd6-like 6	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 52 - 489

Fln protein: S*PWLSLILEWSTVGTFSLYALFTAITFIFVVLCVPETKGKTLEEIEASYR*

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGAGTGGAGCACTGTAGGAACATTCTCACTGTATGCTCTCTTTACTGCCATTACGTTCATCTTTGTGGTGCTGTGTGTGCCTGAAACCAAGGGGAAAACTCTGGAGGAAATTGAGGCATCATATAGATAA___GGTTGAGCTAGCCGGGAACCTTAGATTCTATTGATGGCAGGACATATTGCTCTGAAAGGATAAAGTCCTTTTAACAGAAAAAATTGGT

Fln Alignment:

uagpf_mira_c10328___LSLILEWSTVGTFSLYALFTAITFIFVVLCVPETKGKTLEEIEASYR
A9NUP5________________INLLLEWSSVGTFSLYALFTVFTFIFVVLCVPETKGKTLEEIEASYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain