SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29301

Length: 338 nt

UniGene Fasta

>uagpf_v2_unigene29301
CGTCGTGACCTTGGCTGTCACTCAGGTTGAAAATCATGCTGCGGCTCCTATTCTGGCAAACCGTGCAGCATCACAAAATGTCTCACTATATGAGCTACTAAATAGAACTTTAAAAACAATGGCACATGATTTACAAGCCCCATTTATTGCCTCTTTGTCAAAGGATTTACATGTGCTTCCAGACTTCCACGGCAACAGGAACAATACTTGTGTATTAGCGGGGTGGTTACGAGGTCCCTAGAAGTGGAGTAAACAGATTGTAATTTGGATTGATACACTTTTTGCATGTGGAGGACTCTCCAAAAATTCTTTGTATGTTCAAGAGCATGCAGACATCA

Ace file of the UniGene uagpf_v2_unigene29301

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34339	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FGGY family of carbohydrate kinase [Arabidopsis thaliana] gb\|AEE85751.1\| FGGY family of carbohydrate kinase [Arabidopsis thaliana]	-	-	3.0e-23	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	fggy family of carbohydrate kinase	-	-	2.53142e-37	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	2.53142e-37	61%

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Carbohydrate kinase, FGGY-related	IPR006003	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK74

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 112 - 575

Fln protein: VVTLAVTQVENHAAAPILANRAASQNVSLYELLNRTLKTMAHDLQAPFIASLSKDLHVLPDFHGNRNNTCVLAGWLRGP*KWSKQIVIWIDTLFACGGLSKNSLYVQEHADI

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTGAAAATCATGCTGCGGCTCCTATTCTGGCAAACCGTGCAGCATCACAAAATGTCTCACTATATGAGCTACTAAATAGAACTTTAAAAACAATGGCACATGATTTACAAGCCCCATTTATTGCCTCTTTGTCAAAGGATTTACATGTGCTTCCAGACTTCCACGGCAACAGGAACAATACTTGTGTATTAGCGGGGTGGTTACGAGGTCCCTAGAAGTGGAGTAAACAGATTGTAATTTGGATTGATACACTTTTTGCATGTGGAGGACTCTCCAAAAATTCTTTGTATGTTCAAGAGCATGCAGACATCA

Fln Alignment:

uagpf_mira_c10295___VENHAAAPILANRAASQNVSLYELLNRTLKTMAHDLQAPFIASLSKDLHVLPDFHGNRNNTC------VLAGWLRGP*KWSKQIVIW-----------------------IDTLFACGGLSKNSLYVQEHADI
B8LK74________________VENHAAAPILANRAASQNVSLYELLNRTLETMAHDLQVPFVASLSKDLHVLPDFHGNRSPVADPKAKGTISGLTLDTNDKSLAILYLATVQSIAYGTRHIIEHCNSHGHKIDTLFACGGLSKNSLYVQEHADI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain