UniGene Name: uagpf_v2_unigene29227
Length: 120 nt
UniGene Fasta |
---|
>uagpf_v2_unigene29227
A |
Ace file of the UniGene uagpf_v2_unigene29227 |
---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
Annotations |
---|
Parent Assembly | Parent UniGene | Reads (related/total) |
---|---|---|
SustainPine v2.0 | sp_v2.0_unigene1963 | 2/2 |
Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Multidrug/pheromone exporter, MDR family, ABC transporter family n=2 Tax=Malpighiales RepID=B9IFR5_POPTR | - | - | 0.0 | 71% |
Blast2go | abc transporter b family member 1-like | - | - | 0.0 | 87% |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Blast2go | EC:3.6.3.3- | - | 0.0 | 87% | |
Blast2go | Xenobiotic-transporting ATPase. | EC:3.6.3.44 | - | 0.0 | 87% |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Blast2go | positive gravitropism | GO:0009958 | Biological Process | 0.0 | 87% |
Blast2go | response to nematode | GO:0009624 | Biological Process | 0.0 | 87% |
Blast2go | anthocyanin accumulation in tissues in response to UV light | GO:0043481 | Biological Process | 0.0 | 87% |
Blast2go | photomorphogenesis | GO:0009640 | Biological Process | 0.0 | 87% |
Blast2go | regulation of cell size | GO:0008361 | Biological Process | 0.0 | 87% |
Blast2go | response to blue light | GO:0009637 | Biological Process | 0.0 | 87% |
Blast2go | auxin efflux | GO:0010315 | Biological Process | 0.0 | 87% |
Blast2go | auxin polar transport | GO:0009926 | Biological Process | 0.0 | 87% |
Blast2go | transmembrane transport | GO:0055085 | Biological Process | 0.0 | 87% |
Blast2go | ATP catabolic process | GO:0006200 | Biological Process | 0.0 | 87% |
Blast2go | stamen development | GO:0048443 | Biological Process | 0.0 | 87% |
Blast2go | ferric-transporting ATPase activity | GO:0015408 | Molecular Function | 0.0 | 87% |
Blast2go | auxin efflux transmembrane transporter activity | GO:0010329 | Molecular Function | 0.0 | 87% |
Blast2go | xenobiotic-transporting ATPase activity | GO:0008559 | Molecular Function | 0.0 | 87% |
Blast2go | calmodulin binding | GO:0005516 | Molecular Function | 0.0 | 87% |
Blast2go | ATP binding | GO:0005524 | Molecular Function | 0.0 | 87% |
Blast2go | plastid | GO:0009536 | Cellular Component | 0.0 | 87% |
Blast2go | integral to membrane | GO:0016021 | Cellular Component | 0.0 | 87% |
Blast2go | plasma membrane | GO:0005886 | Cellular Component | 0.0 | 87% |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Peptidase, cysteine peptidase active site | IPR000169 | - | 0.0 | - |
Sma3 | ABC transporter, transmembrane domain | IPR001140 | - | 0.0 | - |
Sma3 | F-box domain, cyclin-like | IPR001810 | - | 0.0 | - |
Sma3 | Ribosomal protein L10, eubacterial, conserved site | IPR002363 | - | 0.0 | - |
Sma3 | ABC transporter-like | IPR003439 | - | 0.0 | - |
Sma3 | AAA+ ATPase domain | IPR003593 | - | 0.0 | - |
Sma3 | K Homology domain, type 1 | IPR004088 | - | 0.0 | - |
Sma3 | Vacuolar fusion protein MON1 | IPR004353 | - | 0.0 | - |
Sma3 | Phosphopantetheine attachment site | IPR006162 | - | 0.0 | - |
Sma3 | Inorganic pyrophosphatase | IPR008162 | - | 0.0 | - |
Sma3 | Leucine-rich repeat 2 | IPR013101 | - | 0.0 | - |
Sma3 | IPR013596 | - | 0.0 | - | |
Sma3 | ABC transporter, conserved site | IPR017871 | - | 0.0 | - |
Sma3 | ABC transporter, integral membrane type 1 | IPR017940 | - | 0.0 | - |
Sma3 | Cytochrome P450, conserved site | IPR017972 | - | 0.0 | - |
Sma3 | HTH domain AraC-type, conserved site | IPR018062 | - | 0.0 | - |
Sma3 | Peroxidases heam-ligand binding site | IPR019793 | - | 0.0 | - |
Full-Lengther Next Prediction |
---|
Fln status: unknown
Fln database: testcode
Fln msg: Sequence length < 200 nt
Test code: 0
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain