SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29174

Length: 248 nt

UniGene Fasta

>uagpf_v2_unigene29174
CGTCGTGACCTTGGCTGTCACTCATTTGTGTGGTCCGGCCTCCTTGCAATCACAATTTCACTACTGTGGGTGGCGATAAATCCTCCACAAGGAAGCACAGGGATTGGAGGAAGTTTTCAGTTTCCATAAGCCACAAGAAGAATATGATTTTGAATGTAATTAATTCCAGTTCAGCATTGTCTGAACTACTAAAATTTGATGGGGTTCAGCTGTGGCAAATTTCCGTTTGTTCCTTGTTCATATTCTTT

Ace file of the UniGene uagpf_v2_unigene29174

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4503	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase-like protein n=2 Tax=Populus RepID=B9IPJ4_POPTR	-	-	82%
FL-Next	sp=Cellulose synthase-like protein D3; Arabidopsis thaliana (Mouse-ear cress).	-	-	85%
Blast2go	cellulose synthase-like protein	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	94%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	94%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	94%
Blast2go	response to cold	GO:0009409	Biological Process	94%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	94%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	94%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	94%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	94%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9M9M4

Fln msg: your sequence is shorter than subject: 43 - 1145

Fln protein: RRDLGCHSFVWSGLLAITISLLWVAINPPQGSTGIGGSFQFP*

Protein Length: 44

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTGTGGTCCGGCCTCCTTGCAATCACAATTTCACTACTGTGGGTGGCGATAAATCCTCCACAAGGAAGCACAGGGATTGGAGGAAGTTTTCAGTTTCCATAA___GCCACAAGAAGAATATGATTTTGAATGTAATTAATTCCAGTTCAGCATTGTCTGAACTACTAAAATTTGATGGGGTTCAGCTGTGGCAAATTTCCGTTTGTTCCTTGTTCATATTCTTT

Fln Alignment:

uagpf_mira_c9987___FVWSGLLAITISLLWVAINPPQGSTGIGGSFQFP
Q9M9M4________________YVWSGLVAITISLLWVAINPPAGSTQIGGSFTFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain