SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29132

Length: 225 nt

UniGene Fasta

>uagpf_v2_unigene29132
CGTCGTGACCTTGGCTGTCACTCAGTCGTCTAGTTGGAAATGTGCCTACCTTTGCAGATCCAGCTGAGGTAGAGCTTGTACAATTCCGTACCTGTGTTGGCATAACAAAAAAGTATCAACATCTTGAAGCTATGCATTGGGCAGTACGCCCTGTGATTTTTACACTGGGTATCTTGACAGCATTGAAACTTGGAATGTTTGTGGGTAGCGTAAGTTTTAAAGCAG

Ace file of the UniGene uagpf_v2_unigene29132

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene891	1/2
SustainPine v2.0	sp_v2.0_unigene26025	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] ref\|NP_849560.1\| protein kinase family protein [Arabidopsis thaliana] ref\|NP_001031769.1\| protein kinase family protein [Arabidopsis thaliana] gb\|AAM13866.1\| unknown protein [Arabidopsis thaliana] gb\|AA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein kinase family protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	73%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAZ4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 51 aas, your sequence is shorter than subject: 74 - 168

Fln protein: S*PWLSLSRLVGNVPTFADPAEVELVQFRTCVGITKKYQHLEAMHWAVRPVIFTLGILTALKLGMFVGSVSFKA

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCGTCTAGTTGGAAATGTGCCTACCTTTGCAGATCCAGCTGAGGTAGAGCTTGTACAATTCCGTACCTGTGTTGGCATAACAAAAAAGTATCAACATCTTGAAGCTATGCATTGGGCAGTACGCCCTGTGATTTTTACACTGGGTATCTTGACAGCATTGAAACTTGGAATGTTTGTGGGTAGCGTAAGTTTTAAAGCAG

Fln Alignment:

uagpf_mira_c9893___RLVGNVPTFADPAEVELVQFRTCVGITKKYQHLEAMHWAVRPVIFTLGILTALKLGMFVGSVSFKA
D5AAZ4________________RLVGNVPTLADPAEVELVQFRTCVGITKKYQHLEAMHWAVRPVIFTLGILTALKLGMFVGSISLKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain