SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29108

Length: 471 nt

UniGene Fasta

>uagpf_v2_unigene29108
CGTCGTGACCTTGGCTGTCACTCAAAATTAGCGTCGTGACCTTGGCTGTCACTCAAATAGTTGTTTAGTAAAGCATCCAAGATCTCGTCCTAAGATGAGTGAAGTGGTTGAGATATTGAAACAGATAGTAGAAGCTGCAGAAGCAGAAAGCCCTCAACCACCAATTGTTTGTGAAACTGTTGACAGCAGCACTGAGATTTTAACTGAGCCTGCAAAAGACACTGTCAATTCAAAGCGGCGAATGCTACTCCTGAGAGACATGATGAACCTTAGAAGTAGAGACAATGGCCGTCCTGCTTGGAGAGCATGGACTCCAAAGATGGTGAGAACATGGTAAATGAATTTCAACCAGAAGTGACTGCCAAACACAAAATTTTAGTTACAATAATGAATCATAAAGTACTCCCATTCAGAACTGGGCAATCCATTTTGTGTTTATAGGTCAGATGTATAAATTTGCTTTTCTTGATA

Ace file of the UniGene uagpf_v2_unigene29108

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1649	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	protein serine/threonine kinase [Lophopyrum elongatum] gb\|AAK11674.1\|AF339747_1 protein kinase [Lophopyrum elongatum]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	48%
Blast2go	protein kinase chloroplast	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6GV07

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 112 - 447

Fln protein: VVTLAVTQN*RRDLGCHSNSCLVKHPRSRPKMSEVVEILKQIVEAAEAESPQPPIVCETVDSSTEILTEPAKDTVNSKRRMLLLRDMMNLRSRDNGRPAWRAWTPKMVRTW*

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTAGCGTCGTGACCTTGGCTGTCACTCAAATAGTTGTTTAGTAAAGCATCCAAGATCTCGTCCTAAGATGAGTGAAGTGGTTGAGATATTGAAACAGATAGTAGAAGCTGCAGAAGCAGAAAGCCCTCAACCACCAATTGTTTGTGAAACTGTTGACAGCAGCACTGAGATTTTAACTGAGCCTGCAAAAGACACTGTCAATTCAAAGCGGCGAATGCTACTCCTGAGAGACATGATGAACCTTAGAAGTAGAGACAATGGCCGTCCTGCTTGGAGAGCATGGACTCCAAAGATGGTGAGAACATGGTAA___ATGAATTTCAACCAGAAGTGACTGCCAAACACAAAATTTTAGTTACAATAATGAATCATAAAGTACTCCCATTCAGAACTGGGCAATCCATTTTGTGTTTATAGGTCAGATGTATAAATTTGCTTTTCTTGATA

Fln Alignment:

uagpf_mira_c9827___SNSCLVKHPRSRPKMSEVVEILKQIVE---AAEAESPQPPIVCETVDSSTEILTEPAKDTVNSKXXXXXXXXXXXXXSRDNGRPAWRAWTPKMVRTW
F6GV07________________ANKCLSKQPKSRPKMSEVVEILGNIISEIAPQEEVAPQPINETDNVKEEAEEETEPIKQGNNYLRKVFDLKDMVNLRTKSVGKLDWRNWTPGMVRTW

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
34	25			75	0.99649
36	25		75		0.99649
37		25		75	0.99649
38	25		75		0.99649
40	25	75			0.99649
41		75	25		0.99649
45		33	66		0.997452
46		66	33		0.997452
48		33	66		0.997452
51	66			33	0.997452
52		66	33		0.997452
53			33	66	0.997452
55	50	25			0.995533
59	66		33		0.997452
233	80		20		0.995498
234	80			20	0.995498
235	80	20			0.995498
237		80		20	0.995496
239	20		80		0.995496
241		20	80		0.995496
242	80			20	0.995496
243	75			25	0.996473
244			25	75	0.996473
249		75	25		0.996473
255		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain