SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29086

Length: 177 nt

UniGene Fasta

>uagpf_v2_unigene29086
CGTCGTGACCTTGGCTGTCACTCAATAGCGTGTTAGGGAACCATGATTACAGGGGAGATGTGTTAGCTCAGCTCAGTCCCTCTCTGAGAAGCCGAGATCCTCGATGGAACTGTGGAAGGTCATTCGTTCTCAAGTACGAGATTTGCCCACATGGGCCTGCATCTGGAGAGCACACTT

Ace file of the UniGene uagpf_v2_unigene29086

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene64284	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Purple acid phosphatase 3 n=3 Tax=Arabidopsis RepID=PPA3_ARATH	-	-	9.94922e-44	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	purple acid phosphatase	-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of anthocyanin metabolic process	GO:0031539	Biological Process	83%
Blast2go	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	83%
Blast2go	red or far-red light signaling pathway	GO:0010017	Biological Process	83%
Blast2go	de-etiolation	GO:0009704	Biological Process	83%
Blast2go	identical protein binding	GO:0042802	Molecular Function	83%
Blast2go	DNA binding	GO:0003677	Molecular Function	83%
Blast2go	vacuole	GO:0005773	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRL4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 176 aas, your sequence is shorter than subject: 58 - 352

Fln protein: S*PWLSLNSVLGNHDYRGDVLAQLSPSLRSRDPRWNCGRSFVLKYEICPHGPASGEHT

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGCGTGTTAGGGAACCATGATTACAGGGGAGATGTGTTAGCTCAGCTCAGTCCCTCTCTGAGAAGCCGAGATCCTCGATGGAACTGTGGAAGGTCATTCGTTCTCAAGTACGAGATTTGCCCACATGGGCCTGCATCTGGAGAGCACACTT

Fln Alignment:

uagpf_mira_c9780___PWLSLNSVLGNHDYRGDVLAQLSPSLRSRDPRWNCGRSFVLKYEICPHGPASG
A9NRL4________________PWYS---VLGNHDYRGDALAQLSPSLRNKDHRWQCERSFILKYTICPHGLQSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain