SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29065

Length: 217 nt

UniGene Fasta

>uagpf_v2_unigene29065
TTCATCATCAGGTCCTCCTGTATTTTCTGATGCGGAATCCCTTTTGTCACTTTTCAAGGATTGTCGGAGGGAGTTGGCGGACCTTAGTCACCAGATTGATGCAAGATTGAGCAATCTTAAGAAGGAAGTTGCTCTTCAAGATTCTAAGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTGATGCCCTATTTGAGAGTTTAACAGGCATTCGC

Ace file of the UniGene uagpf_v2_unigene29065

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2379	1/2
SustainPine v2.0	sp_v2.0_unigene9179	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	exocyst complex component 5 [Arabidopsis thaliana] ref\|NP_568270.3\| exocyst complex component 5 [Arabidopsis thaliana] sp\|Q8RVQ5.2\|EXOC5_ARATH RecName: Full=Exocyst complex component 5; AltName: Full=Exocyst complex component Sec10 dbj\|BAD95324.1\| putativ	-	-	70%
FL-Next	sp=Exocyst complex component 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	exocyst complex component 5	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	86%
Blast2go	Pyrimidine metabolism	00240	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	86%
Blast2go	vesicle docking	GO:0048278	Biological Process	86%
Blast2go	exocytosis	GO:0006887	Biological Process	86%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	86%
Blast2go	DNA binding	GO:0003677	Molecular Function	86%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%
Blast2go	exocyst	GO:0000145	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exocyst complex component Sec10	IPR009976	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RVQ5

Fln msg: Distance to subject end: 675 aas, your sequence is shorter than subject: 72 - 825

Fln protein: SSSGPPVFSDAESLLSLFKDCRRELADLSHQIDARLSNLKKEVALQDSKHRKTLSELEKGVDALFESLTGIR

Protein Length: 73

Fln nts: TTCATCATCAGGTCCTCCTGTATTTTCTGATGCGGAATCCCTTTTGTCACTTTTCAAGGATTGTCGGAGGGAGTTGGCGGACCTTAGTCACCAGATTGATGCAAGATTGAGCAATCTTAAGAAGGAAGTTGCTCTTCAAGATTCTAAGCATCGGAAAACACTGTCTGAGCTGGAGAAGGGAGTTGATGCCCTATTTGAGAGTTTAACAGGCATTCGC

Fln Alignment:

uagpf_mira_c9735___SGPPVFSDAESLLSLFKDCRRELADLSHQIDARLSNLKKEVALQDSKHRKTLSELEKGVDALFES
Q8RVQ5________________SSAPFFPEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEIEKGVDGLFES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain