SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29055

Length: 213 nt

UniGene Fasta

>uagpf_v2_unigene29055
CATGGCCGATCCTAGGGAATCTCCTTCAGATGGGATTTGCCAGTGGCGCGTTCGAGAGCTCAGTGCAGAAATTCCATGAGAGATACGGCCCAATATTCACCATGTGGCTCGGTTCCCGCCCTCTGCTCATGATCGCTTCCCAAGACCTTGCCCATGAGGCGCTCATACAGAAGGGCTCCCTCTTCTCTGACCGCCCGCCTGCCACCGGGATGC

Ace file of the UniGene uagpf_v2_unigene29055

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21234	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 77A3 n=1 Tax=Glycine max RepID=C77A3_SOYBN	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	cytochrome p450 77a3-like	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	64%
Blast2go	flower development	GO:0009908	Biological Process	64%
Blast2go	mitochondrion	GO:0005739	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKV3

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 70 - 148

Fln protein: WPILGNLLQMGFASGAFESSVQKFHERYGPIFTMWLGSRPLLMIASQDLAHEALIQKGSLFSDRPPATGM

Protein Length: 71

Fln nts: CATGGCCGATCCTAGGGAATCTCCTTCAGATGGGATTTGCCAGTGGCGCGTTCGAGAGCTCAGTGCAGAAATTCCATGAGAGATACGGCCCAATATTCACCATGTGGCTCGGTTCCCGCCCTCTGCTCATGATCGCTTCCCAAGACCTTGCCCATGAGGCGCTCATACAGAAGGGCTCCCTCTTCTCTGACCGCCCGCCTGCCACCGGGATGC

Fln Alignment:

uagpf_mira_c9712___WPILGNLLQMGFASGAFESSVQKFHERYGPIFTMWLGSRPLLMIASQDLAHEALIQKGSLFSDR
A9NKV3________________WPIVGNLLQLREKKP--HHTFTKWARNYGPIYSIRTGATPMVVLNSSQLAKEAMVTKFSAISSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain