SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29042

Length: 183 nt

UniGene Fasta

>uagpf_v2_unigene29042
CGTCGTGACCTTGGCTGTCACTCAGTTTGTCTCTGCGTGGGTGTTAATAGGCTTCAACCTCTTGGCAGCGAAGCTAAGGTATGATGATCCACTGGAGGCCGCGCAACTCCACGGTGGTTGCGGGGCTTGGGGGATTATCTTTACTGCACTCTTTGCGAAGGAGGAGTATGTTTTGCAAGCGTA

Ace file of the UniGene uagpf_v2_unigene29042

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene51924	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ammonium transporter 1 member 2 n=1 Tax=Solanum lycopersicum RepID=AMT12_SOLLC	-	-	8.0e-19	82%
FL-Next	sp=Ammonium transporter 1 member 2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	82%
Blast2go	ammonium transporter	-	-	9.17302e-23	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	9.17302e-23	91%
Blast2go	methylammonium transport	GO:0015843	Biological Process	9.17302e-23	91%
Blast2go	ammonium transport	GO:0015696	Biological Process	9.17302e-23	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.17302e-23	91%

Source	InterPros	Term	Type	Identity
Sma3	Ammonium transporter	IPR001905	-	-
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Phosphoesterase	IPR007312	-	-
Sma3		IPR010256	-	-
Sma3	Ammonium transporter, conserved site	IPR018047	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O04161

Fln msg: Distance to subject end: 109 aas, your sequence is shorter than subject: 60 - 514

Fln protein: VVTLAVTQFVSAWVLIGFNLLAAKLRYDDPLEAAQLHGGCGAWGIIFTALFAKEEYVLQA

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGTCTCTGCGTGGGTGTTAATAGGCTTCAACCTCTTGGCAGCGAAGCTAAGGTATGATGATCCACTGGAGGCCGCGCAACTCCACGGTGGTTGCGGGGCTTGGGGGATTATCTTTACTGCACTCTTTGCGAAGGAGGAGTATGTTTTGCAAGCGTA

Fln Alignment:

uagpf_mira_c9674___VTQFVSAWVLIGFNLLAAKLRYDDPLEAAQLHGGCGAWGIIFTALFAKEEYV
O04161________________VCGFIAAWVLIGFNALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKKEYV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain