SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29035

Length: 299 nt

UniGene Fasta

>uagpf_v2_unigene29035
ACCAGAAACCCTACCAGATCCACGCCTAGACGATGCGTACAAATGCAGCAGCTCTTGTTTTTGTAGGGCTCTTTGTGCAGCAGTGAGGACGACGCTTGAGCCTTTTTATCTTTTGTGCGAAGTGAAAGGACGTTGATTTTGGAAACGCATGCCGGTAGTGCTCTGGGGGCGTGCAAACTTTGCACGCCATTTGTCGTGAAGGCGCGATGGTTCGCCGCCATGGCTGGCAGCTGCCTGCTCACACTTTTCAGGTTGTAGCTATCACAGTGTTTTTCGTGCTGGCAATTGCATTCTATGCA

Ace file of the UniGene uagpf_v2_unigene29035

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9386	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative S-acyltransferase [Arabidopsis thaliana] sp\|Q6DR03.1\|ZDHC3_ARATH RecName: Full=Probable S-acyltransferase At2g33640; AltName: Full=Probable palmitoyltransferase At2g33640; AltName: Full=Zinc finger DHHC domain-containing protein At2g33640 gb\|AAT6	-	-	2.0e-08	83%
FL-Next	sp=Probable S-acyltransferase At2g33640; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Peroxisome biogenesis factor 1, N-terminal	IPR015342	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q6DR03

Fln msg: Distance to subject end: 534 aas, your sequence is shorter than subject: 31 - 565

Fln protein: MVRRHGWQLPAHTFQVVAITVFFVLAIAFYA

Protein Length: 32

Fln nts: ACCAGAAACCCTACCAGATCCACGCCTAGACGATGCGTACAAATGCAGCAGCTCTTGTTTTTGTAGGGCTCTTTGTGCAGCAGTGAGGACGACGCTTGAGCCTTTTTATCTTTTGTGCGAAGTGAAAGGACGTTGATTTTGGAAACGCATGCCGGTAGTGCTCTGGGGGCGTGCAAACTTTGCACGCCATTTGTCGTGAAGGCGCG_-_ATGGTTCGCCGCCATGGCTGGCAGCTGCCTGCTCACACTTTTCAGGTTGTAGCTATCACAGTGTTTTTCGTGCTGGCAATTGCATTCTATGCA

Fln Alignment:

uagpf_mira_c9658___MVRRHGWQLPAHTFQVVAITVFFVLAIAFYA
Q6DR03________________MARRHGWQLPAHTFQVVAITVFFLLTVAYYA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain