SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene29022

Length: 210 nt

UniGene Fasta

>uagpf_v2_unigene29022
CGTCGTGACCTTGGCTGTCACTCATTTTGATGCTTATTGGCGTGAAGGACAAAACCGTTTGGATTTTGCAATTACATGGATAATTGTCATTGGTGAAACATTGACTTTTGCTTTTCCACATGGTCTACCGATCCTCTCCAATGCAGAGTGGATCCGTTACTTGATAATGCTAGACTTCTACGACTAACAAGAATTTTGATGCGCATTCCA

Ace file of the UniGene uagpf_v2_unigene29022

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene541	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Voltage-dependent calcium channel protein TPC1 n=2 Tax=Andropogoneae RepID=B6SP34_MAIZE	-	-	52%
FL-Next	sp=Two pore calcium channel protein 1; Triticum aestivum (Wheat).	-	-	70%
Blast2go	two-pore calcium channel	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	seed germination	GO:0009845	Biological Process	74%
Blast2go	regulation of jasmonic acid biosynthetic process	GO:0080141	Biological Process	74%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	74%
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	74%
Blast2go	regulation of calcium ion transport via voltage-gated calcium channel activity	GO:0051925	Biological Process	74%
Blast2go	voltage-gated calcium channel activity	GO:0005245	Molecular Function	74%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	74%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6YLX9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 181 aas, your sequence is shorter than subject: 62 - 742

Fln protein: VVTLAVTHFDAYWREGQNRLDFAITWIIVIGETLTFAFPHGLPILSNAEWIRYLIMLDFYD*

Protein Length: 63

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGATGCTTATTGGCGTGAAGGACAAAACCGTTTGGATTTTGCAATTACATGGATAATTGTCATTGGTGAAACATTGACTTTTGCTTTTCCACATGGTCTACCGATCCTCTCCAATGCAGAGTGGATCCGTTACTTGATAATGCTAGACTTCTACGACTAACAAGAATTTTGATGCGCATTCCA

Fln Alignment:

uagpf_mira_c9631___FDAYWREGQNRLDFAITWIIVIGETLTFAFPHGLPILSNAEWIRYLIM
Q6YLX9________________FGAYWMEGQNKFDFVLTWTIFIGETLTFAFPSKLPFLSNGEWIRYLLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain