SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28945

Length: 317 nt

UniGene Fasta

>uagpf_v2_unigene28945
CGTCGTGACCTTGGCTGTCACTCATTTCAGACGGATCACTTGAACAAATAGAATGGATGGAGTTAAAATTTTTTTTCTTCTTAATCAGGATTGAGCATCCAATCGGTTAATGCTCATAACTCTTTTGACTTGAAAATTTCACTAAATTTATGTTGGATTCTCATGCTGGTGCACTTTTAACTGTAGATATAGAAGGAAACCATGGTAAGAAGGCCAGTAGATCCGGAGGAGGAGCTCAGAATGATGGCTCAAGAAGTCCGTGGTTATGTGGAAGCTGTTCTGAATAGTCTTGCTGCAAATGTTCCCAAAGCTGTGGT

Ace file of the UniGene uagpf_v2_unigene28945

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene80936	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02212, GED, Dynamin GTPase effector domain	-	-	1.0e-05	25%
FL-Next	sp=Dynamin-2B; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	87%
Blast2go	protein	-	-	3.93737e-33	88%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LQ55

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 156 aas, your sequence is shorter than subject: 105 - 920

Fln protein: RRDLGCHSFQTDHLNK*NGWS*NFFSS*SGLSIQSVNAHNSFDLKISLNLCWILMLVHF*L*I*KETMVRRPVDPEEELRMMAQEVRGYVEAVLNSLAANVPKAV

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCAGACGGATCACTTGAACAAATAGAATGGATGGAGTTAAAATTTTTTTTCTTCTTAATCAGGATTGAGCATCCAATCGGTTAATGCTCATAACTCTTTTGACTTGAAAATTTCACTAAATTTATGTTGGATTCTCATGCTGGTGCACTTTTAACTGTAGATATAGAAGGAAACCATGGTAAGAAGGCCAGTAGATCCGGAGGAGGAGCTCAGAATGATGGCTCAAGAAGTCCGTGGTTATGTGGAAGCTGTTCTGAATAGTCTTGCTGCAAATGTTCCCAAAGCTGTGGT

Fln Alignment:

uagpf_mira_c9459___ETMVRRPVDPEEELRMMAQEVRGYVEAVLNSLAANVPKAV
Q9LQ55________________DKMVRKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain