SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28816

Length: 399 nt

UniGene Fasta

>uagpf_v2_unigene28816
CGTCGTGACCTTGGCTGTCACTCAATTTTTGCATGCAGAGTTGTGTGGAAATCTACAGAAAGCAGTGGTTCTCTGGTGCGTTGTCTATCATTGCTGTTTCCATTATTGCCAAAACTGAATTGATGAGCCAGTACCCAGATTTTAGGGCTCTGACAGAGATACTCTGCTCACGCACACCAGCTGAAATTCTTCGGATCAGAGAAGCATATCGCCGCCTGTACAAAGTTTGTTTAGAAGAGGACATTGCTCAAGAAACAGTTGGGCCTCACCAAAAGCTTCTTTTGCATTGGCAAAAGCACAACGATGTCCATCGAGAGATGTAAATATTTGTCAGGCCAAATCTGATGCAAAAAGCTGTATGGGGCTAGGGAAGGAAGAATTGGAATAGATGAAGGAGCA

Ace file of the UniGene uagpf_v2_unigene28816

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8463	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Annexin-like protein (Fragment) n=2 Tax=Picea sitchensis RepID=E0ZC70_PICSI	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	annexin-like protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium-dependent phospholipid binding	GO:0005544	Molecular Function	0.0	67%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Annexin	IPR001464	-	-
Sma3	Annexin, plant	IPR009118	-	-
Sma3		IPR015472	-	-
Sma3	Annexin repeat, conserved site	IPR018252	-	-
Sma3	Annexin repeat	IPR018502	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQS6

Fln msg: warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 100 aas, your sequence is shorter than subject: 129 - 290

Fln protein: VVTLAVTQFLHAELCGNLQKAVVLWCVVYHCCFHYCQN*IDEPVPRF*GSDRDTLLTHTS*NSSDQRSISPPVQSLFRRGHCSRNSWASPKASFALAKAQRCPSRDVNICQAKSDAKSCMGLGKEELE*

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGCATGCAGAGTTGTGTGGAAATCTACAGAAAGCAGTGGTTCTCTGGTGCGTTGTCTATCATTGCTGTTTCCATTATTGCCAAAACTGAATTGATGAGCCAGTACCCAGATTTTAGGGCTCTGACAGAGATACTCTGCTCACGCACACCAGCTGAAATTCTTCGGATCAGAGAAGCATATCGCCGCCTGTACAAAGTTTGTTTAGAAGAGGACATTGCTCAAGAAACAGTTGGGCCTCACCAAAAGCTTCTTTTGCATTGGCAAAAGCACAACGATGTCCATCGAGAGATGTAAATATTTGTCAGGCCAAATCTGATGCAAAAAGCTGTATGGGGCTAGGGAAGGAAGAATTGGAATAGATGAAGGAGCA

Fln Alignment:

uagpf_mira_c9153___VTQFLHAELCGNLQKAVVLWCVVYHCCFHYCQN*IDEPVPRF*GSDRDTLLTHTS*NSS--DQRSISP------PVQSL-FRRGH------CSRNSWASP------KASFALAKAQRCPSRDVNICQAKSDAK
C0PQS6________________LSTLLHAELWGNLEKAVVLW--------------MHDP------AERDAIIAKTELRSQYPDFRALTEILCSRTPAETLRIREAYRGLYKACLEEDIAQETVGPHQKLLFTLAKAQRCPSRDVNICQAKCDAK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
83	33	33	33		0.997752
85		33	33	33	0.997752
89		33	33	33	0.997752
91		33	33	33	0.997752
94		33	33	33	0.997753
95	33		33	33	0.997753
98	33		33	33	0.997753
100	33		33	33	0.997753
101	33	33		33	0.997753
102	33		33	33	0.997753
138		66		33	0.997467
142			66	33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain