SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28720

Length: 453 nt

UniGene Fasta

>uagpf_v2_unigene28720
CGTTGAATATGTTGAGGATATATACAAGTTCTATCGCAGGACAGAGCAAATGAGCTGTGTGCCAGATTATATGCCCAGACAACAAGAGATTAATGCCAAAATGAGAGCAGTATTAATAAATTGGTTAATTGAGGTACATTATAGATTTGGGTTGATGCCAGAGACTTTGTATCTTACCACAAATCTTCTTGATAGATATCTTGCTACTCAACTTGTATCGAGGAGCAACTATCAATTAGTGGGTGCCACTGCAATGCTTCTAGCTTCAAAGTATGAGGAAATTTGGGCTCCAGAGATGAATGACTTTCTTGACATCTTAGAAAATAAATTTGAGAGGAAACATGTACTGGTTATGGAGAAGGCAATGCTCAACAAACTGAAATTCCATCTCACAGTCCCAACTCCATATGTATTCCTTGTCCGGTCCTCAAAGCTGCTGCCTCTGATGAAGAG

Ace file of the UniGene uagpf_v2_unigene28720

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6837	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	cyclin B1 [Allium cepa]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	cyclin b1	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	cell cycle	GO:0007049	Biological Process	76%
Blast2go	cell division	GO:0051301	Biological Process	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin A, G2/mitotic-specific	IPR015453	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC16

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 150 - 465

Fln protein: VEYVEDIYKFYRRTEQMSCVPDYMPRQQEINAKMRAVLINWLIEVHYRFGLMPETLYLTTNLLDRYLATQLVSRSNYQLVGATAMLLASKYEEIWAPEMNDFLDILENKFERKHVLVMEKAMLNKLKFHLTVPTPYVFLVRSSKLLPLMK

Protein Length: 151

Fln nts: CGTTGAATATGTTGAGGATATATACAAGTTCTATCGCAGGACAGAGCAAATGAGCTGTGTGCCAGATTATATGCCCAGACAACAAGAGATTAATGCCAAAATGAGAGCAGTATTAATAAATTGGTTAATTGAGGTACATTATAGATTTGGGTTGATGCCAGAGACTTTGTATCTTACCACAAATCTTCTTGATAGATATCTTGCTACTCAACTTGTATCGAGGAGCAACTATCAATTAGTGGGTGCCACTGCAATGCTTCTAGCTTCAAAGTATGAGGAAATTTGGGCTCCAGAGATGAATGACTTTCTTGACATCTTAGAAAATAAATTTGAGAGGAAACATGTACTGGTTATGGAGAAGGCAATGCTCAACAAACTGAAATTCCATCTCACAGTCCCAACTCCATATGTATTCCTTGTCCGGTCCTCAAAGCTGCTGCCTCTGATGAAGAG

Fln Alignment:

uagpf_mira_c8939___VEYVEDIYKFYRRTEQMSCVPDYMPRQQEINAKMRAVLINWLIEVHYRFGLMPETLYLTTNLLDRYLATQLVSRSNYQLVGATAMLLASKYEEIWAPEMNDFLDILENKFERKHVLVMEKAMLNKLKFHLTVPTPYVFLVRSSK
D5AC16________________VEYVEGIYKFYRRTEHMSCVPDYMPRQRDINGKMRAILINWLIEVHYRFGLMPETLYLTINLLDRYLSIQRVSRNNFQLVGTTAMLLASKYEEIWAPKVDEFLDILENNYERKHVLVMEKEMLNKLKFHLTVPTPYVFLVRFLK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
73		33		66	0.997461
75		66		33	0.997467
77		66	33		0.997467
78	66			33	0.997461
83	66	33			0.997464
97	33	66			0.997454
98	33	66			0.997454
180	33	66			0.997452
188			20	80	0.995495
191			20	80	0.995495
196	80	20			0.995495
197		20	80		0.995495
198	75			25	0.996473
200	75		25		0.996473
201			25	75	0.996473
206		75		25	0.996473
207		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain