SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28705

Length: 673 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene28705

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27939	1/6
SustainPine v2.0	sp_v2.0_unigene28216	4/6

Source	Descriptions	Term	Type	Identity
AutoFact	[R] COG4624 Iron only hydrogenase large subunit, C-terminal domain	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cytosolic fe-s cluster assembly factor narfl-like	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Iron hydrogenase, small subunit-like	IPR003149	-	-
Sma3	Iron hydrogenase, large subunit, C-terminal	IPR004108	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	DEK, C-terminal	IPR014876	-	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
290			50	50	1.0
291			50	50	1.0
293	50		50		1.0
296	50			50	1.0
300	50			50	1.0
303		50		50	1.0
306			50	50	1.0
307	50	50			1.0
308	50			50	1.0
309	50	50			1.0
311		50	50		1.0
312	50	50			1.0
334		50		50	1.0
425		75	25		0.996481
431	25	75			0.996481
433	75	25			0.996483
434			75	25	0.996483
435	75			25	0.99649
437	75		25		0.996483
438	75	25			0.996483
439	75			25	0.996483
440	75		25		0.996483
442		25		75	0.99649
443	33			66	0.997452
444	75	25			0.99649
460		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain