SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28687

Length: 216 nt

UniGene Fasta

>uagpf_v2_unigene28687
AAATTTGGCATCAGAAGTGAGAAATTGAAATGGTTTTTAGATGAAATAAGGAAATATAAATATGAACTGACTCTTGTGGGGGTGCATTACCATCTTGGATCAACCATCACGAATGTTGACGTTTTTAGGGAGGCAACAACTTCAATGATCCAGTTCATTGATCAAATACGAGCTGAAGGCTTTGATATTAAATATTTAAACATAGGAGGAGGTTTG

Ace file of the UniGene uagpf_v2_unigene28687

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5128	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Diaminopimelate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RH82_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	diaminopimelate decarboxylase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:4.1.1.2-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	lysine biosynthetic process via diaminopimelate	GO:0009089	Biological Process	82%
Blast2go	diaminopimelate decarboxylase activity	GO:0008836	Molecular Function	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	0.0	-
Sma3	Diaminopimelate decarboxylase, LysA	IPR002986	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQH1

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 72 - 488

Fln protein: KFGIRSEKLKWFLDEIRKYKYELTLVGVHYHLGSTITNVDVFREATTSMIQFIDQIRAEGFDIKYLNIGGGL

Protein Length: 73

Fln nts: AAATTTGGCATCAGAAGTGAGAAATTGAAATGGTTTTTAGATGAAATAAGGAAATATAAATATGAACTGACTCTTGTGGGGGTGCATTACCATCTTGGATCAACCATCACGAATGTTGACGTTTTTAGGGAGGCAACAACTTCAATGATCCAGTTCATTGATCAAATACGAGCTGAAGGCTTTGATATTAAATATTTAAACATAGGAGGAGGTTTG

Fln Alignment:

uagpf_mira_c8861___KFGIRSEKLKWFLDEIRKYKYELTLVGVHYHLGSTITNVDVFREATTSMIQFIDQIRAEGFDIKYLNIGGGL
C0PQH1________________KFGIRNEKLQWFLDTVKAHPNELNLVGAHCHLGSTITKVNIFKDAAVLMIQYIDQIRAQGFEIKYLNIGGGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain