SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28675

Length: 274 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene28675
CGTCGTGACCTTGGCTGTCACTCACTTGTTAACGACATTAAAACGGCGGTCGGAATTCAGCGCCGATCAGATGGGATTGCAACGAAAGAGGAAGTTTTGAAAGCGGCGAGGGAAGTGATGGAAGGAGAAAATGCAAAGAAAAAGAGGGCGAGAGCGAAAGAAATAAAGGAGAGTGCCATAGCAGCTCTGGCAGATGGTGGAAGCTCTACCCGCGCTCTGGCGGCCGTTGCGGGTCTGTGGAAGAAAAAACCATGGTCGGCGCAACGAAATTTGT

Ace file of the UniGene uagpf_v2_unigene28675 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7291	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin 5,3-O-glucosyltransferase n=3 Tax=Rosa hybrid cultivar RepID=ANGLT_ROSHC	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	udp-glucose: anthocyanidin -o-glucosyltransferase	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	61%
Blast2go	xenobiotic catabolic process	GO:0042178	Biological Process	61%
Blast2go	response to toxin	GO:0009636	Biological Process	61%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXT2

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 91 - 464

Fln protein: RRDLGCHSLVNDIKTAVGIQRRSDGIATKEEVLKAAREVMEGENAKKKRARAKEIKESAIAALADGGSSTRALAAVAGLWKKKPWSAQRNL

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTGTTAACGACATTAAAACGGCGGTCGGAATTCAGCGCCGATCAGATGGGATTGCAACGAAAGAGGAAGTTTTGAAAGCGGCGAGGGAAGTGATGGAAGGAGAAAATGCAAAGAAAAAGAGGGCGAGAGCGAAAGAAATAAAGGAGAGTGCCATAGCAGCTCTGGCAGATGGTGGAAGCTCTACCCGCGCTCTGGCGGCCGTTGCGGGTCTGTGGAAGAAAAAACCATGGTCGGCGCAACGAAATTTGT

Fln Alignment:

uagpf_mira_c8837___LVNDIKTAVGIQRRSDGIATKEEVLKAAREVMEGENXXXXXXXXKEIKESAIAALADGGSSTRALAAVAGLWKK
A9NXT2________________LVNDIKMAVRTKMGADGIVTKEEVEKAAKELMEGEDGKKKRERARELRESAKAALAEGGSSRQALAAAAALFCK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
264	66			33	0.997476
269	66			33	0.997459
270		66		33	0.997459
271			66	33	0.997459
272	66			33	0.997459
273		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain