SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28616

Length: 535 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene28616

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12995	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	embryo sac development arrest 7 protein [Arabidopsis thaliana] emb\|CAB72169.1\| putative protein [Arabidopsis thaliana] gb\|AAL47467.1\| AT3g56990/F24I3_70 [Arabidopsis thaliana] gb\|AEE79596.1\| embryo sac development arrest 7 protein [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	75%
Blast2go	nucleolar protein 10	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	megagametogenesis	GO:0009561	Biological Process	77%
Blast2go	nucleolus	GO:0005730	Cellular Component	77%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NUC153	IPR012580	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
73	25			75	0.996479
74		75	25		0.996479
76	25			75	0.996479
80	25	75			0.996479
83			33	66	0.997452
84	33		66		0.997452
85			66	33	0.997452
87	33			66	0.997452
89			33	66	0.997452
90	33	66			0.997452
91	66		33		0.997452
92		66	33		0.997452
111	80			20	0.995495
112		20	80		0.995495
114	80			20	0.995497
115	80		20		0.995497
119		20	80		0.995495
120	75			25	0.996473
121	75			25	0.996473
122	75		25		0.996473
126			25	75	0.996473
131	75	25			0.996473
174			16	83	0.994517
175			83	16	0.994517
180		83	16		0.994523
181	16			83	0.994523
182		16		83	0.994523
184	80			20	0.995493
185	80			20	0.995493
189		80		20	0.995493
190			16	83	0.994523
192		16		83	0.994523
193	16			83	0.994523
195			80	20	0.995493
196	80	20			0.995493
197	20		80		0.995493
316	83	16			0.994517
318	83			16	0.994517
321			83	16	0.994517
325		16	83		0.994519
326	83			16	0.994517
327	80			20	0.995493
332	75		25		0.996473
334		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain