SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28598

Length: 345 nt

UniGene Fasta

>uagpf_v2_unigene28598
TGTATCGACCTTGGCTGTCACTCGTGATTTTCTTTCTCTCGTGATTATACGAAGCAGAAATATTTAGCATCAATGGAAGGTGCAGTGCTGTCAGGGAAGCTTTGTGCTCAGGCTATTTTACAGGACTATAGCTTACTTGCAGTTCAAGCTGGACAGAATGAAGTGGTTGAAGCAACCTTTGCATAGTGCAATCAAAGGTGATTTTGTGTGGGCAATATGCTGATTTATCCAATCAGCAGATGTCACTGTAAGGTGGAATTTCTGTGTTTGATTGAAATGTTTCCAATGAAAGGATTTTCAAGGGAGATCTTAACCTTATTTAATTATATTTGTGAAAGTGCATGC

Ace file of the UniGene uagpf_v2_unigene28598

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7998	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Phytoene desaturase n=1 Tax=Diospyros kaki RepID=D1LZY8_DIOKA	-	-	82%
FL-Next	sp=Phytoene dehydrogenase, chloroplastic/chromoplastic; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	70%
Blast2go	phytoene desaturase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.14.99.3-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	carotene biosynthetic process	GO:0016120	Biological Process	91%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	91%
Blast2go	carotene 7,8-desaturase activity	GO:0016719	Molecular Function	91%
Blast2go	phytoene dehydrogenase activity	GO:0016166	Molecular Function	91%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	91%
Blast2go	chromoplast	GO:0009509	Cellular Component	91%
Blast2go	membrane	GO:0016020	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amine oxidase	IPR002937	-	0.0	-
Sma3	Phytoene desaturase	IPR014102	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P28554

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 62 - 583

Fln protein: CIDLGCHS*FSFSRDYTKQKYLASMEGAVLSGKLCAQAILQDYSLLAVQAGQNEVVEATFA*

Protein Length: 63

Fln nts: TGTATCGACCTTGGCTGTCACTCGTGATTTTCTTTCTCTCGTGATTATACGAAGCAGAAATATTTAGCATCAATGGAAGGTGCAGTGCTGTCAGGGAAGCTTTGTGCTCAGGCTATTTTACAGGACTATAGCTTACTTGCAGTTCAAGCTGGACAGAATGAAGTGGTTGAAGCAACCTTTGCATAG___TGCAATCAAAGGTGATTTTGTGTGGGCAATATGCTGATTTATCCAATCAGCAGATGTCACTGTAAGGTGGAATTTCTGTGTTTGATTGAAATGTTTCCAATGAAAGGATTTTCAAGGGAGATCTTAACCTTATTTAATTATATTTGTGAAAGTGCATGC

Fln Alignment:

uagpf_mira_c8696___FSFSRDYTKQKYLASMEGAVLSGKLCAQAILQDYSLLAVQAGQNEVVEAT
P28554________________FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELL-VGRSQKKLSEAS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
46		33	66		0.997457
47	66		33		0.997457
49			33	66	0.997457
52	66	33			0.997457
92		25		75	0.996477
98			75	25	0.996481
102		25	75		0.996478
106			33	66	0.997452
119	66	33			0.997452
120	25			75	0.99649
124	66		33		0.997452
159	80		20		0.995497
160			80	20	0.995497
161	80	20			0.995497
162	80		20		0.995497
167	80	20			0.995497
168			80	20	0.995497
172		25		75	0.996473
175	75			25	0.996473
176	75	25			0.996473
177	25		75		0.996473
180	75			25	0.996473
182	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain