SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28328

Length: 501 nt

UniGene Fasta

>uagpf_v2_unigene28328
CGTCGTGACCTTGGCTGTCACTCATGTTCAGATCGAGGGGGATCAGGCCGGGATGCCAATTTTCGTACGCATTCCGTTGCTATTGGAGAAGGCTAACATATTAGTGGAAGATGCTCTCACGTCGTGACCTTGGCTGTCACTCAGGTTTCATAATCGATGTTTTCGGCACACCCATGTTGGATGTTGCCTCCAAACTAGAGATACCTTCCTACATATTCTACCCTTCTGCGGCTTCTATCCTCTGCATCTTGCTCTACTTGCCAACACTTGCCCACAACATTGAAATCTCCTTCAAAGATGTGGATTTCCCAATCGAAGTGCCAGGCCTTCCGCCGATTCCTGCAATAGATTTGCCGGGCCCTCTTCAAGACAGATCTGATATTTCATTCAACTGGTTCATTCAACGTTCCCTTCGCCTTCACGAAGCATGTGGAATATTGATAAATTCATGCCAGGAAATCGAACCAGAACAAGTAAAAGCTCTCAAGGAAGGAAGGGTTC

Ace file of the UniGene uagpf_v2_unigene28328

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2738	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase UGT72B9 n=1 Tax=Maclura pomifera RepID=A1YGR2_MACPO	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	hydroquinone glucosyltransferase	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	63%
Blast2go	xenobiotic catabolic process	GO:0042178	Biological Process	63%
Blast2go	response to toxin	GO:0009636	Biological Process	63%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	63%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT89

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 257 aas, your sequence is shorter than subject: 166 - 490

Fln protein: S*PWLSLMFRSRGIRPGCQFSYAFRCYWRRLTY*WKMLSRRDLGCHSGFIIDVFGTPMLDVASKLEIPSYIFYPSAASILCILLYLPTLAHNIEISFKDVDFPIEVPGLPPIPAIDLPGPLQDRSDISFNWFIQRSLRLHEACGILINSCQEIEPEQVKALKEGRV

Protein Length: 167

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTCAGATCGAGGGGGATCAGGCCGGGATGCCAATTTTCGTACGCATTCCGTTGCTATTGGAGAAGGCTAACATATTAGTGGAAGATGCTCTCACGTCGTGACCTTGGCTGTCACTCAGGTTTCATAATCGATGTTTTCGGCACACCCATGTTGGATGTTGCCTCCAAACTAGAGATACCTTCCTACATATTCTACCCTTCTGCGGCTTCTATCCTCTGCATCTTGCTCTACTTGCCAACACTTGCCCACAACATTGAAATCTCCTTCAAAGATGTGGATTTCCCAATCGAAGTGCCAGGCCTTCCGCCGATTCCTGCAATAGATTTGCCGGGCCCTCTTCAAGACAGATCTGATATTTCATTCAACTGGTTCATTCAACGTTCCCTTCGCCTTCACGAAGCATGTGGAATATTGATAAATTCATGCCAGGAAATCGAACCAGAACAAGTAAAAGCTCTCAAGGAAGGAAGGGTTC

Fln Alignment:

uagpf_mira_c8138___SGFIIDVFGTPMLDVASKLEIPSYIFYPSAASILCILLYLPTLAHNIEISFKDVDFPIEVPGLPPIPAIDLPGPLQDRSDISFNWFIQRSLRLHEACGILINSCQEIEPEQVKALKEGRV
C0PT89________________SAFITDFFCSAMFDVTAKLCIPTYVFLTSPASLLSLMLSIPKLVSEIPISFKDADFPVEVPGLPPISSRDLPTPLQDRSDEAFFWFVHHFSRLREIKGVLLNTFEELETEPIKTLVEGTI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
358	20	80			0.995495
382		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain