SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28306

Length: 368 nt

UniGene Fasta

>uagpf_v2_unigene28306
CGTCGTGACCTTGGCTGTCACTCAGCTTATGATGTTTGGAAATGAATTACCAGTGGACATGGAAATTGATCAAGTTGAATGTGAACCATGTCAGGGTAGTAATGAACCTTAATTGGTTTCTCTTAACAAACCTGATTTCAGTTTAAATGATAGGGCTTACAGGTACTTCTCACCCTCTTTGGAAAGAGTAAGGTCGTAAGCATGCATACGAGTCATCTACCATTGAACGTGCTATTAGAAGGTTTTCTGTCAATTAGCAAGTTTTCTTCATTGATTGAGTTCTGAATGTAGCTTACAGATTCTTTCTCTAATTATAAACATCTATATCATGAGTAATTAATGAGATCCATGGACGATTCCATGGAGTT

Ace file of the UniGene uagpf_v2_unigene28306

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9408	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription antitermination protein nusG n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9Q1_CARHZ	-	-	1.0e-06	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	transcription termination antitermination factor	-	-	4.92717e-23	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of transcription elongation from RNA polymerase II promoter	GO:0032968	Biological Process	4.92717e-23	66%
Blast2go	transcription termination, DNA-dependent	GO:0006353	Biological Process	4.92717e-23	66%
Blast2go	transcription elongation regulator activity	GO:0003711	Molecular Function	4.92717e-23	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription antitermination protein, NusG, N-terminal	IPR006645	-	0.0	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQH7

Fln msg: Overlapping hits, possible frame ERROR between 67 and 63, your sequence is shorter than subject: 49 - 379

Fln protein: VVTLAVTQLMMFGNELPVDMxxxIKLNVNHVRVVMNLNWFLLTNLISV*

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTATGATGTTTGGAAATGAATTACCAGTGGACATGxxxxxxxxxATCAAGTTGAATGTGAACCATGTCAGGGTAGTAATGAACCTTAATTGGTTTCTCTTAACAAACCTGATTTCAGTTTAAATGATAGGGCTTACAGGTACTTCTCACCCTCTTTGGAAAGAGTAAGGTCGTAAGCATGCATACGAGTCATCTACCATTGAACGTGCTATTAGAAGGTTTTCTGTCAATTAGCAAGTTTTCTTCATTGATTGAGTTCTGAATGTAGCTTACAGATTCTTTCTCTAATTATAAACATCTATATCATGAGTAATTAATGAGATCCATGGACGATTCCATGGAGTT

Fln Alignment:

uagpf_mira_c8083___AVTQLMMFGNELPVDMxxIKLNVNHVRVVMNLNWFLLTNLISV
A9NQH7________________AKLMLMMSGHELPVNMxxIKLNVNQARIIMSLNLFLLTNLISV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain