SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28256

Length: 389 nt

UniGene Fasta

>uagpf_v2_unigene28256
GAATCGCACTGTTAGCTATACTGCACTAAATGACCGCAGCAGCCGTTCTCACAGTGTGTTGACTGTGCATGTGCGAGGTACAGATCGTGTTTCTGGGTGTAACCTTCATAGCTGCCTTAATTTGGTAGATCTTGCTGGAAGTGAGAGGGTGGATAAATCTGAAGTAACTGGAGATCGTTTGAAGGAGGCACAATACATAAACAAGTCCCTTTCATCTCTAGGAGATGTTATCGCAGCATTGGCACAGAGGAATTCGCATGTGCCATATCGAAATAGCAAATTGACTCAATTGCTTCAAGATTCATTAGGGGGCAAGGCAAAGACTCTGATGTTTGTGCACATAAGTCCTGAACCGGATTCATATGGAGAGACAATAAGCACTCTTAAAT

Ace file of the UniGene uagpf_v2_unigene28256

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2515	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Kinesin heavy chain, putative n=1 Tax=Ricinus communis RepID=B9T5B8_RICCO	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	kinesin heavy	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	85%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	85%
Blast2go	microtubule-based movement	GO:0007018	Biological Process	85%
Blast2go	cation transport	GO:0006812	Biological Process	85%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	microtubule	GO:0005874	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	FERM domain	IPR000299	-	-
Sma3	MyTH4 domain	IPR000857	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-
Sma3	Telomere end binding protein	IPR011564	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Tetratricopeptide, MLP1/MLP2-like	IPR012929	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-
Sma3	FERM central domain	IPR019748	-	-
Sma3	Band 4.1 domain	IPR019749	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Distance to subject end: 291 aas, your sequence is shorter than subject: 129 - 509

Fln protein: NRTVSYTALNDRSSRSHSVLTVHVRGTDRVSGCNLHSCLNLVDLAGSERVDKSEVTGDRLKEAQYINKSLSSLGDVIAALAQRNSHVPYRNSKLTQLLQDSLGGKAKTLMFVHISPEPDSYGETISTLK

Protein Length: 130

Fln nts: GAATCGCACTGTTAGCTATACTGCACTAAATGACCGCAGCAGCCGTTCTCACAGTGTGTTGACTGTGCATGTGCGAGGTACAGATCGTGTTTCTGGGTGTAACCTTCATAGCTGCCTTAATTTGGTAGATCTTGCTGGAAGTGAGAGGGTGGATAAATCTGAAGTAACTGGAGATCGTTTGAAGGAGGCACAATACATAAACAAGTCCCTTTCATCTCTAGGAGATGTTATCGCAGCATTGGCACAGAGGAATTCGCATGTGCCATATCGAAATAGCAAATTGACTCAATTGCTTCAAGATTCATTAGGGGGCAAGGCAAAGACTCTGATGTTTGTGCACATAAGTCCTGAACCGGATTCATATGGAGAGACAATAAGCACTCTTAAAT

Fln Alignment:

uagpf_mira_c7974___RTVSYTALNDRSSRSHSVLTV----HVRGTDRVSGCNLHSCLNLVDLAGSER-VDKSEVTGDRLKEAQYINKSLSSLGDVIAALAQRNSHVPYRNSKLTQLLQDSLGGKAKTLMFVHISPEPDSYGETISTLK
D5ACB2________________RSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTVGK-LSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain