SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene28130

Length: 194 nt

UniGene Fasta

>uagpf_v2_unigene28130
TACTTGCAGTGGTCAAGCATGAAATGAGGGATCAAGATTACACAGAAGATAAAACTACATTTGAAACTTCAGGGTTACCCATTACATTTGACACTTCAGCTTTACCCATTACATTCGATGCTTCAGCTTTACCCATTCCTGTGTGCTCTTGCACTGGGGTTCCTCAACAGTGTTACAGGTGGGTAGTGGTGTGC

Ace file of the UniGene uagpf_v2_unigene28130

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5242	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	GAGA-binding transcriptional activator BBR/BPC6-like n=1 Tax=Vitis vinifera RepID=B2Z458_VITVI	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	basic pentacysteine 4	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	59%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	59%
Blast2go	DNA binding	GO:0003677	Molecular Function	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	GAGA binding-like	IPR010409	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A988

Fln msg: Distance to subject end: 72 aas, your sequence is shorter than subject: 64 - 294

Fln protein: LAVVKHEMRDQDYTEDKTTFETSGLPITFDTSALPITFDASALPIPVCSCTGVPQQCYRWVVVC

Protein Length: 65

Fln nts: TACTTGCAGTGGTCAAGCATGAAATGAGGGATCAAGATTACACAGAAGATAAAACTACATTTGAAACTTCAGGGTTACCCATTACATTTGACACTTCAGCTTTACCCATTACATTCGATGCTTCAGCTTTACCCATTCCTGTGTGCTCTTGCACTGGGGTTCCTCAACAGTGTTACAGGTGGGTAGTGGTGTGC

Fln Alignment:

uagpf_mira_c7716___LAVVKHEMRDQDYTEDKTTFETSGLPITFDTSALPITFDASALPIPVCSCTGVPQQCYRW
D5A988________________LAVVKHEKKDQDYTENK------------------ITFDTSALPIPVCSCTGVPQQCYRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain