SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene27810

Length: 254 nt

UniGene Fasta

>uagpf_v2_unigene27810
CGTCGTGACCTTGGCTGTCACTCATTGTTGAAAACTTACATGAGGGTGACAGTAGACTGGTTCGGCAACCTCGGTTTCATGGAGAGAATTTCGAAAAGAATAAAGTATTATTTGAACGAGTTTCTGCTCTAGCTAAGAAGCATGGGTACACGCCCGCGCAATTGGCCCTCGCATGGGTGCTTCATCAAGGAAGTGACGTTGCTCCTATTCCAGGAACAAGTAAAGTAAAAAATTTGGATGAAAATATTGCATCT

Ace file of the UniGene uagpf_v2_unigene27810

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9295	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	perakine reductase [Rauvolfia serpentina]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	aldo keto	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pyridoxine 4-dehydrogenase.	EC:1.1.1.65	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Vitamin B6 metabolism	00750		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	DNA binding	GO:0003677	Molecular Function	81%
Blast2go	pyridoxine:NADP 4-dehydrogenase activity	GO:0050236	Molecular Function	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	tRNA/rRNA methyltransferase, SpoU	IPR001537	-	-
Sma3	RNA methyltransferase TrmH family	IPR004441	-	-
Sma3	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	IPR006913	-	-
Sma3	RNA 2-O ribose methyltransferase, substrate binding	IPR013123	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQX2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 44 aas, your sequence is shorter than subject: 84 - 339

Fln protein: S*PWLSLIVENLHEGDSRLVRQPRFHGENFEKNKVLFERVSALAKKHGYTPAQLALAWVLHQGSDVAPIPGTSKVKNLDENIAS

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTGAAAACTTACATGAGGGTGACAGTAGACTGGTTCGGCAACCTCGGTTTCATGGAGAGAATTTCGAAAAGAATAAAGTATTATTTGAACGAGTTTCTGCTCTAGCTAAGAAGCATGGGTACACGCCCGCGCAATTGGCCCTCGCATGGGTGCTTCATCAAGGAAGTGACGTTGCTCCTATTCCAGGAACAAGTAAAGTAAAAAATTTGGATGAAAATATTGCATCT

Fln Alignment:

uagpf_mira_c7041___IVENLHEGDSRLVRQPRFHGENFEKNKVLFERVSALAKKHGYTPAQLALAWVLHQGSDVAPIPGTSKVKNLDENIAS
C0PQX2________________VVESLPENSS-LVSHPRFKGENLEKNKIFYTHIANLAKKHGCTPGQLALAWVLHQGDDVIPIPGTTKAKNLDENIGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain